GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001160-TA|BGIBMGA001160-PA|IPR003010|Nitrilase/cyanide
hydratase and apolipoprotein N-acyltransferase, IPR003694|NAD+
synthase
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12381| Best HMM Match : CN_hydrolase (HMM E-Value=2.2e-36)         508   e-144
SB_18885| Best HMM Match : NAD_synthase (HMM E-Value=1.9e-07)         175   8e-44
SB_28558| Best HMM Match : NAD_synthase (HMM E-Value=0.027)           163   4e-40
SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1)                 29   9.6  

>SB_12381| Best HMM Match : CN_hydrolase (HMM E-Value=2.2e-36)
          Length = 360

 Score =  508 bits (1252), Expect = e-144
 Identities = 233/360 (64%), Positives = 286/360 (79%), Gaps = 3/360 (0%)

Query: 1   MGRKVTVAVCTLNQWALDFEGNLNRILQSIQEAKELGALYRTGPELEICGYSCEDHFHES 60
           MGRKVT+AVCT+NQWALDF+GNL RILQSIQ AK  GA YR GPELEICGY C DHF E 
Sbjct: 1   MGRKVTLAVCTINQWALDFDGNLKRILQSIQLAKAKGASYRLGPELEICGYGCNDHFFEG 60

Query: 61  DTYLHSWQVLVELLKSPTCKDILIDVGMPVQHRNVSYNCRVAFFNRKIILIRPKMILCDD 120
           DT LHS+QVL  LL SP  +DI+ DVGMP+ H+NV YNCRV F N KI+LIRPK+ LC+ 
Sbjct: 61  DTILHSFQVLAFLLNSPVTRDIICDVGMPILHKNVRYNCRVIFLNGKILLIRPKIQLCNT 120

Query: 121 GNYRETRWFSCWTKDRQVEDFYLPRMITAVTNQSTVPIGDAVISTRDTCIGFEICEELWN 180
           GNYRE RWF+ W K +Q E+F+LPRMI+ +T QSTVP GD V+ST DTCIG E+CEEL++
Sbjct: 121 GNYREMRWFTPWRKMKQTEEFFLPRMISDITGQSTVPFGDGVVSTSDTCIGSEVCEELFS 180

Query: 181 PQSRHIPLSLDGVEIISNGSGSYMELRKAYVTVDLVKSATFKSGGAYLFSNLRGCDGQRI 240
             S HIP++LDGVEI +NGSGS+ ELRK    V+LV SAT K+GG Y++SNLRGCDG+R+
Sbjct: 181 LDSTHIPMALDGVEIFTNGSGSHHELRKLDKRVNLVISATEKAGGVYMYSNLRGCDGERV 240

Query: 241 YFNGCSCVAVNGEIVSRGQQFGLIDVEVTTATIDLEDIRSYRAKNRSRCHLAASNKP--F 298
           Y++GCS +AVNG++V++G QF L DVEV TAT+DLED+ SYR  N +    AA ++P  +
Sbjct: 241 YYDGCSFIAVNGKVVAQGAQFALQDVEVVTATVDLEDVHSYRGANMT-FGAAAIHQPTSY 299

Query: 299 PRIFVDVSLSDDEDIHLTTNPPIQWHYLSPEEEISLGPACWLWDYLRRSGQGGFFLPLSG 358
           PR+ VD +L+ D+D+ +  +  I+ HY +PEEEISLGPACWLWDYLRRSGQ GFFLPLSG
Sbjct: 300 PRVKVDYALTHDDDLVVPLSDAIRVHYHTPEEEISLGPACWLWDYLRRSGQAGFFLPLSG 359


>SB_18885| Best HMM Match : NAD_synthase (HMM E-Value=1.9e-07)
          Length = 145

 Score =  175 bits (427), Expect = 8e-44
 Identities = 88/144 (61%), Positives = 103/144 (71%)

Query: 445 ILIDTAVNAALGIFTAATGLLPIFKSKGGCPRQNLALQNIQARIRMVLSYLFAQLMXXXX 504
           I ID AV+A L IFTA T  +P FK  GG   +NLALQN+QAR+RM+ +YLFAQL+    
Sbjct: 2   ITIDAAVSAVLTIFTAMTSKVPKFKVHGGSHTENLALQNVQARLRMIFAYLFAQLILWAR 61

Query: 505 XXXXXXXXXXSSNVDEALRGYMTKYDCSSADINPIGGISKTDLKSFLHYAKNRFFLPSLS 564
                     SSNVDE LRGY+TKYDCSSADINPIGGISKTDL++F+ +   ++   SL 
Sbjct: 62  GMPGGLLVLGSSNVDEGLRGYLTKYDCSSADINPIGGISKTDLRAFIFHCVEKYNFSSLI 121

Query: 565 EILEAPPTAELEPLADGQITQTDE 588
            IL APPTAELEPLADGQI Q DE
Sbjct: 122 TILGAPPTAELEPLADGQIQQKDE 145


>SB_28558| Best HMM Match : NAD_synthase (HMM E-Value=0.027)
          Length = 499

 Score =  163 bits (396), Expect = 4e-40
 Identities = 71/105 (67%), Positives = 83/105 (79%)

Query: 590 DMGMTYAELSEFGTLRKTYKCGPYSMFEKLVHKWSDKCTPKEVAEKVKHFFRCYAINRHK 649
           DMGMTY ELS +G LRK   CGPYSMF KL+  W D+    +VA KVK FF+ Y+INRHK
Sbjct: 148 DMGMTYDELSLYGRLRKISWCGPYSMFTKLLDVWRDELRADQVANKVKFFFQTYSINRHK 207

Query: 650 MTVLTPSYHAETYSPDDNRFDLRPFLYRVHWNWQFKTIDDAVRTI 694
           MT LTPSYHAE+YSPDDNRFDLRPFLY V W+WQF+TIDD ++ +
Sbjct: 208 MTTLTPSYHAESYSPDDNRFDLRPFLYNVRWSWQFRTIDDQLQKL 252



 Score = 67.3 bits (157), Expect = 4e-11
 Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 3/57 (5%)

Query: 399 DYTPSDPMELCNKLLVTCYMASENSSRETKQRASQLASQIGSYHFPILIDTAVNAAL 455
           +Y P+DP EL N++ VTCYM +ENSS ET++RA+ LA ++GSYH   L  TA +A L
Sbjct: 2   EYIPTDPRELANRIFVTCYMGTENSSEETRKRAANLADEMGSYH---LESTAHHATL 55


>SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1)
          Length = 599

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 357 SGGVDSSSTACIVFSMCTQICEAIKKGESQVLYDVRKIMCQPDYT 401
           SGG +       +  +CT+I   I K + +VL+  R+I+  P+ T
Sbjct: 202 SGGKNKKERNDRLVHLCTEIANIIDKNKRRVLHTRRRILNSPEST 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,695,593
Number of Sequences: 59808
Number of extensions: 1012732
Number of successful extensions: 2030
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2024
Number of HSP's gapped (non-prelim): 5
length of query: 697
length of database: 16,821,457
effective HSP length: 87
effective length of query: 610
effective length of database: 11,618,161
effective search space: 7087078210
effective search space used: 7087078210
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)