Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001159-TA|BGIBMGA001159-PA|IPR007261|Vacuolar protein
sorting 36
(401 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35538| Best HMM Match : Vps36 (HMM E-Value=3.1e-07) 69 7e-12
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_42304| Best HMM Match : NHL (HMM E-Value=0) 33 0.41
SB_2095| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.41
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066) 32 0.95
SB_12377| Best HMM Match : SpoU_methylase (HMM E-Value=4.3) 30 2.9
SB_36982| Best HMM Match : adh_short (HMM E-Value=1.4e-05) 30 3.8
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) 30 3.8
SB_47732| Best HMM Match : Pkinase (HMM E-Value=0.0016) 29 5.0
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 29 6.7
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0) 29 8.8
SB_55616| Best HMM Match : Exo_endo_phos (HMM E-Value=0.032) 29 8.8
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 29 8.8
SB_17360| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-26) 29 8.8
>SB_35538| Best HMM Match : Vps36 (HMM E-Value=3.1e-07)
Length = 102
Score = 68.9 bits (161), Expect = 7e-12
Identities = 30/52 (57%), Positives = 39/52 (75%)
Query: 346 IQENGYLTPEKLSQIANVSVLLARERLFTTERLGLACRDESIEGLAFYPNRF 397
+ + G LT E+L+ A VSV+LA+ERL TE+ G ACRD+S+EGL FYPN F
Sbjct: 46 LDDKGSLTAEELAHFAEVSVMLAKERLLVTEKAGKACRDDSVEGLRFYPNLF 97
Score = 39.1 bits (87), Expect = 0.006
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 276 GGIMSLADVWCRVNRARGLELVSPEDLLNACKLLRTVDAPMSLRK 320
GG+M+L+DV+CR NRARG+EL + L A +L + + L K
Sbjct: 26 GGMMALSDVYCRFNRARGMEL-DDKGSLTAEELAHFAEVSVMLAK 69
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 33.5 bits (73), Expect = 0.31
Identities = 43/190 (22%), Positives = 89/190 (46%), Gaps = 13/190 (6%)
Query: 179 EEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREKQGDISEDDTVRFKSYLMS 238
+E+ R + + A +++T LM + + SK+ +I++ + ED + L +
Sbjct: 2897 KEELRQKETELHEAREEITVLMNR----IESSKD--KQIKKVMKAVCEDIEAVEEKELHA 2950
Query: 239 LGIDDPVTRDAFRSDSEYYLGLAQQVSDMMVAVLLEC--GGIMSLADVWCRVNRARGLEL 296
+D + + +D E L ++ +M + LE G +M+L D + ++ R ++
Sbjct: 2951 AVVDQLDSAPSNSADREEVTRL--KIENMRMKARLEAADGKLMNLQDELHKTSKDRVIDE 3008
Query: 297 VSPEDLLNACKLLRTVDAPMSLRKFPSGACVLQLNSNRD-EEIAKSTSDMIQENGYLTPE 355
+ +D + K L+ + L++ A +QLN +D E++ K ++ +EN L
Sbjct: 3009 KTIKDKESENKTLK--EEEQDLKRRLRQADNVQLNLRKDLEDLQKEKEELRKENENLKKR 3066
Query: 356 KLSQIANVSV 365
KLS + V V
Sbjct: 3067 KLSIVEKVKV 3076
>SB_42304| Best HMM Match : NHL (HMM E-Value=0)
Length = 1279
Score = 33.1 bits (72), Expect = 0.41
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 12 FDGENYLKR-DKNVKIYDGDDKTQFIDGE----VLLTTHRLLWGKPGDIPKGLVCLSLHL 66
F G+ +++R ++ D D+K +F D + LLTT R+ K G K V LSL L
Sbjct: 1114 FKGQEFVRRLTTSLDQVDSDEKLRFADPDDKRNTLLTTKRVYVMKVGSACKENVVLSLKL 1173
Query: 67 YYVFCLE-EESGGVFGLGGPKRIIMHLGPALPGKRP 101
+ ++ + +E G + L KRI LP P
Sbjct: 1174 HELYKTQHKEIEGTYYLELVKRIAGMQHHNLPSPHP 1209
>SB_2095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 33.1 bits (72), Expect = 0.41
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 205 EMVSLSKNISTKIREKQG--DISED---DTVRFKSYLMSLGIDDPVTR-DAFRSDSEYYL 258
E +KNI+ K ++++G D S + +RFK+ L L ++ + + +SD++++
Sbjct: 57 EQYQYTKNITEKFQKQEGPADTSHNIIYSAMRFKNALDDLTLEPDIFHLNPKKSDTDWFK 116
Query: 259 GLAQQVSDMMVAVLLECGGIMSLADV 284
+ + + V VLL C I+++ V
Sbjct: 117 NIIRSLDICQVKVLLPCTEIVNICPV 142
>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
Length = 909
Score = 31.9 bits (69), Expect = 0.95
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 7/143 (4%)
Query: 174 IERSIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREK----QGDISEDDT 229
+ER E+ + A D+ + L E+ +L K++STK ++ + +I + D
Sbjct: 570 LERKREDYNTAADERRYQMAKKKDTLQATRSELETLVKDLSTKTGKERLALEKEIQKKDK 629
Query: 230 V--RFKSYLMSLGIDDPVTRDAFRSDSEYYL-GLAQQVSDMMVAVLLECGGIMSLADVWC 286
+ K+YL L +D R A + + + L +Q+ + LE + L D
Sbjct: 630 IYAEQKAYLHQLETEDAKIRQAVDQELDNEMSALTKQLEQNQAFLKLERLNLEELQDAKA 689
Query: 287 RVNRARGLELVSPEDLLNACKLL 309
R L L ++ N K+L
Sbjct: 690 AAIRKDELHLKEAQEKYNEVKIL 712
>SB_12377| Best HMM Match : SpoU_methylase (HMM E-Value=4.3)
Length = 165
Score = 30.3 bits (65), Expect = 2.9
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 310 RTVDAPMSLRKFPSGACVLQLNSN-RDEEIAKSTSDMIQENGYLTPEKLSQIANVSVLLA 368
+T D P L++ GAC +Q +SN ++ T I N + +S + + LL+
Sbjct: 78 QTPDLPKFLQEMKEGACEIQFSSNAHSYYLSTHTKPKIVSNRLIWTPSMSLLQQATPLLS 137
Query: 369 RERLFTTERLGLA 381
R F RL L+
Sbjct: 138 VPRCF-ARRLTLS 149
>SB_36982| Best HMM Match : adh_short (HMM E-Value=1.4e-05)
Length = 258
Score = 29.9 bits (64), Expect = 3.8
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 268 MVAVLLECGGIMSLADVWCRVNRARGLELVSPEDLLNACKLLRTVDAPMSLRK-FPSGAC 326
M + L G + +CR ARG V L C+ LR +P
Sbjct: 1 MAPLALVQGASRGIGLQFCRHLLARGNGFV-----LATCRNPTNAKELQDLRSNYPKNMA 55
Query: 327 VLQLNSNRDEEIAKSTSDMIQEN 349
+ +L+++ +E+I K+T+DMI+EN
Sbjct: 56 IFELDAHNEEKI-KATADMIKEN 77
>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 1997
Score = 29.9 bits (64), Expect = 3.8
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 164 NSKIRSGIVGIERSIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREKQGD 223
N K S I+ + + +EEQ A +Q+++ + M++ +E + K K+ +++
Sbjct: 1200 NKKRESDIIKLRKDLEEQALAHEQAVNSMRSKQNQQMQEMQEELDQVKKTKAKLEKEKAQ 1259
Query: 224 ISED 227
++ +
Sbjct: 1260 LTNE 1263
>SB_47732| Best HMM Match : Pkinase (HMM E-Value=0.0016)
Length = 318
Score = 29.5 bits (63), Expect = 5.0
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 215 TKIREKQGDISEDDTVRFKSYLMSLGIDDPVTRDAFRSD 253
T I + GD E++ RF+SY+ L DDP D F+ D
Sbjct: 197 TYISDFLGDAIEENPKRFRSYIKQLKNDDPGVAD-FKVD 234
>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2653
Score = 29.1 bits (62), Expect = 6.7
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 168 RSGIVGIERSIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREKQGDISED 227
++ + E I E A D SI+ + LTK + + + + ++T + ++QG +E+
Sbjct: 1356 QASLAEAESKIAELQAAYDHSIAEK-ETLTKNIAQTAARLKRASKLTTALGDEQGRWTEN 1414
Query: 228 DTVRFKSY 235
VR SY
Sbjct: 1415 VAVRMHSY 1422
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 29.1 bits (62), Expect = 6.7
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 81 GLGGPKRIIMHLGPALPGKRPGPAVVSPF 109
G GP +++ P PG+RPG VVSPF
Sbjct: 3599 GWTGPTCVLIVTAPN-PGQRPGSRVVSPF 3626
>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
Length = 1014
Score = 28.7 bits (61), Expect = 8.8
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 177 SIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNIS 214
SIEEQ D++I+ + + K EKAK+ ++++ +S
Sbjct: 656 SIEEQVTKVDENIAKCEEQVEKCSEKAKQTQAINEKLS 693
>SB_55616| Best HMM Match : Exo_endo_phos (HMM E-Value=0.032)
Length = 296
Score = 28.7 bits (61), Expect = 8.8
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 244 PVTRDAFRSD-SEYYLGLAQQVSDMMVAVLLECGGIMSLADVWCRVNRARGLELVSPEDL 302
P FR D S+ Y G+ V D+ L E + +NR + + + + +
Sbjct: 131 PSNYSVFRKDRSDGYGGVLLAVKDLSCHELYELNSDCETVWIKVSINRRKHVYIGAFYNP 190
Query: 303 LNACKLLRTVDAPMSLRKFPSGACVLQLNS--NRDEEIAKSTSDMIQENGYLTP-EKLSQ 359
++C+ L +D +S + SG V+ L N +I T+ + + + ++T EKL +
Sbjct: 191 DSSCEALDELDRSLSKLQRKSGNSVIYLGGDFNLGGDICWETNTIARGSRHVTACEKLLE 250
Query: 360 IANV 363
+ ++
Sbjct: 251 MCSI 254
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 28.7 bits (61), Expect = 8.8
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 340 KSTSDMIQENGYLTPEKLSQIANVSVLLARERLFTTERL 378
K+TS ++ Y T EKL++++NV L ER T R+
Sbjct: 89 KTTSQEYEDRLYKTQEKLAELSNVRQQLENERENLTIRM 127
>SB_17360| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-26)
Length = 715
Score = 28.7 bits (61), Expect = 8.8
Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 7/157 (4%)
Query: 116 FKDGVDTAFYKALSDAVAAKAWERQTPIDXXXXXXXXXXXXXXXXXXXNSKIRSGIVGIE 175
+K GV T S VAA +R TP+ + G+ G+
Sbjct: 506 WKPGVATP---TTSGVVAAPRKKRVTPVVKKRKVVPMGELTDTQPLIVSEDEEEGVAGVS 562
Query: 176 -RSIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREKQGDISEDDTVRFKS 234
S EE+ ++SI A K ++K + +T+ E+ + D+ F
Sbjct: 563 TNSTEEEEEEEEKSILAAVAPPGKKLKKVTA-TEVDSGDATRGSEESDYETVDENSCFDE 621
Query: 235 YLMSLGIDDPVTRDAFRSDSEYYLGLAQQVSDMMVAV 271
S G DD V A+ D+E LA+ + VA+
Sbjct: 622 E--SSGGDDDVFEQAYMEDAEREQHLAEDDTPSSVAL 656
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.137 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,404,508
Number of Sequences: 59808
Number of extensions: 499161
Number of successful extensions: 1254
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1245
Number of HSP's gapped (non-prelim): 20
length of query: 401
length of database: 16,821,457
effective HSP length: 84
effective length of query: 317
effective length of database: 11,797,585
effective search space: 3739834445
effective search space used: 3739834445
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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