Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001159-TA|BGIBMGA001159-PA|IPR007261|Vacuolar protein
sorting 36
         (401 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.6  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   6.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   6.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 278 IMSLADVWCRVNRARGLELVS 298
           IM L +V CR +  RG+ +VS
Sbjct: 706 IMDLDNVMCRTSGPRGVAIVS 726


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 294 LELVSPEDLLNACKLLRTVDAPMSLRKFPSG--ACVLQLNS 332
           L +    D+L + +L      PM LR FP    +C L L S
Sbjct: 142 LRISQDGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGS 182


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 224 ISEDDTVRFKSYLMSLGIDDPVTRDAFRSD 253
           I E D V F  Y   + +DD   R  + SD
Sbjct: 303 IPESDLVTFLCYPSVMNLDDLTRRSLYLSD 332


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 224 ISEDDTVRFKSYLMSLGIDDPVTRDAFRSD 253
           I E D V F  Y   + +DD   R  + SD
Sbjct: 303 IPESDLVTFLCYPSVMNLDDLTRRSLYLSD 332


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 218 REKQGDISEDDTVRFKSYLMSLG-IDDPVTRDAFRSDSEYYLGLAQQVS 265
           RE +    E D+ R ++Y+M+LG I +P     F    E YL   QQ++
Sbjct: 616 RELRKAHQEKDSPRIQTYIMALGMIGEPKILSVF----EPYLEGKQQMT 660


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 316 MSLRKFPSGACVLQLNSNRDEEIAKSTSDMIQENGYLTPEKL 357
           MSL +  SGA  +   ++  +E   STSD I++   +  EK+
Sbjct: 1   MSLGQRISGAVAVLRGTSEVKEAQTSTSDEIEKITTVEEEKI 42


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,013
Number of Sequences: 429
Number of extensions: 4595
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 8
length of query: 401
length of database: 140,377
effective HSP length: 59
effective length of query: 342
effective length of database: 115,066
effective search space: 39352572
effective search space used: 39352572
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)