GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001159-TA|BGIBMGA001159-PA|IPR007261|Vacuolar protein
sorting 36
         (401 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1109 - 34576866-34577043,34577774-34577845,34577934-345780...   119   4e-27
01_06_1650 - 38904543-38904662,38904940-38905014,38905100-389051...    33   0.40 
11_03_0195 + 11482228-11483067,11485215-11485415                       31   1.2  
06_02_0105 - 11893666-11895483,11895661-11896422                       29   5.0  
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    29   5.0  
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190...    29   6.6  
02_02_0270 + 8431503-8431830,8431961-8432149,8434288-8434412,843...    29   6.6  
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318...    29   8.7  

>01_06_1109 -
           34576866-34577043,34577774-34577845,34577934-34578079,
           34578337-34578406,34578516-34578573,34578658-34578751,
           34579264-34579347,34579958-34580341
          Length = 361

 Score =  119 bits (287), Expect = 4e-27
 Identities = 67/177 (37%), Positives = 102/177 (57%), Gaps = 7/177 (3%)

Query: 225 SEDDTVRFKSYLMSLGIDDPVTRDAFRSDSEYYLGLAQQVSDMMVAVLLECGGIMSLADV 284
           S  + V    +L+S+GI  PVT++   + + Y+  L++Q++D +   L + GG+M+L DV
Sbjct: 120 SRSEVVAVVDWLLSVGIVSPVTKET--AGALYHQQLSRQLADYIRTPLEKAGGMMALVDV 177

Query: 285 WCRVNRARGLELVSPEDLLNACKLLRTVDAPMSLRKFPSGACVLQLNSNRDEEIAKSTSD 344
           +C  NRARG EL+SPEDLL AC L    D P+ LRKF SG  V+Q  ++ D+E+    S 
Sbjct: 178 YCLYNRARGTELISPEDLLQACSLWEKFDVPVMLRKFDSGVKVIQTKTHSDDEVFARISS 237

Query: 345 MIQENGYL----TPEKLSQIANVSVLLARERLFTTERLGLACRDESIEGLAFYPNRF 397
           + Q+   L    +P   +    ++  LA+E L   E +G+   D S +GL FY N F
Sbjct: 238 LAQKEDALQKGISPSDAAFTLGIAPALAKEHLLNAESIGIRW-DVSPDGLRFYINLF 293


>01_06_1650 -
           38904543-38904662,38904940-38905014,38905100-38905164,
           38905955-38906037,38906135-38906205,38906385-38906459,
           38906702-38906783,38906869-38906933,38907202-38907312,
           38907394-38907494,38908514-38908619
          Length = 317

 Score = 33.1 bits (72), Expect = 0.40
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 167 IRSGIVGIERSIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREKQGDISE 226
           ++S    +  S E+  +  DQ++     DLTK+ +   ++++  K +  K   K  + + 
Sbjct: 68  VKSYANAVLSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKY--KAAEQAS 125

Query: 227 DDTVRFKSYLMSLGIDDPVTRDAFRSDSEY 256
           DD  R     +  G D+ + R+A +    Y
Sbjct: 126 DDWYRRAQLALQKG-DEDLAREALKRRKSY 154


>11_03_0195 + 11482228-11483067,11485215-11485415
          Length = 346

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 352 LTPEKLSQIANVSVLLARERLFTTERLGLACRDESIEGLA 391
           L P KL  +  +  LL    +FTTER G A   E++ GLA
Sbjct: 70  LPPAKLPFLRRLMRLLVSSGVFTTERGGAAAEAEAVYGLA 109


>06_02_0105 - 11893666-11895483,11895661-11896422
          Length = 859

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 15/45 (33%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 168 RSGIVGIERSIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKN 212
           R+G++G+++ +E+  +  D+S S+A +   KL  KAKE +  +K+
Sbjct: 591 RNGMLGLQKIMEDTAKEADESKSIAREAQEKL-RKAKEDMDHAKS 634


>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 12/45 (26%), Positives = 26/45 (57%)

Query: 177 SIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREKQ 221
           S +E+HR    +++V   ++ +L E+ K + ++  N++TK    Q
Sbjct: 140 SNDEEHREAKAALAVTKAEIGRLSEENKRLKNMLSNVTTKYNSLQ 184


>05_01_0251 +
           1901709-1901864,1901968-1901999,1902534-1902664,
           1902740-1902821,1902928-1903054,1903369-1903686,
           1903785-1903846,1903988-1904074,1904139-1904195,
           1906113-1906197,1906916-1907185,1908158-1908254,
           1908390-1908436,1908826-1908939,1909024-1909117,
           1909360-1909457,1910356-1910455,1911445-1911521,
           1911824-1913122
          Length = 1110

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 16/67 (23%), Positives = 31/67 (46%)

Query: 58  GLVCLSLHLYYVFCLEEESGGVFGLGGPKRIIMHLGPALPGKRPGPAVVSPFHYVKLSFK 117
           G++  +LHL  +   EEE   V    GP+  ++ L   +  +R   ++      V+  F 
Sbjct: 627 GVMDKTLHLLQMGFTEEEVSSVIDKAGPEATVLELADTIFARRIASSIEQKEVKVEPDFL 686

Query: 118 DGVDTAF 124
           D  +T++
Sbjct: 687 DETETSY 693


>02_02_0270 +
           8431503-8431830,8431961-8432149,8434288-8434412,
           8434527-8434703,8434798-8434871,8434978-8435713
          Length = 542

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 299 PEDLLNACKLLRTVDAPMSLRKFPSGACVLQLNSNRD---EEIAKSTSDMIQ-ENGYLTP 354
           PED++ +      +D P   R  P+  C L   + RD    E+A +T D+++ E G  T 
Sbjct: 175 PEDMVKSSTKKVVIDKPSMARDIPTSLCDLP-QAVRDGIVNEVA-ATKDVVEMEIGSSTA 232

Query: 355 EKLSQIAN 362
           EK++ +A+
Sbjct: 233 EKVANMAS 240


>08_02_1186 +
           25027498-25029854,25029953-25030564,25031742-25031847,
           25032669-25033199
          Length = 1201

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 242 DDPVTRDAFRSDSEYYLGLAQQVSDMMVAVLLECGGIMSLADVWCRVNRARGLELVSPE 300
           D   T +AF       L    ++ D   +V  E       ++ WCRV R+  L++V P+
Sbjct: 744 DAVTTMEAFPQPPTQQLDRHMEIGDGSHSVESEVKQAYDESNKWCRVERSSNLDVVFPQ 802


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,055,162
Number of Sequences: 37544
Number of extensions: 463749
Number of successful extensions: 1022
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1015
Number of HSP's gapped (non-prelim): 9
length of query: 401
length of database: 14,793,348
effective HSP length: 84
effective length of query: 317
effective length of database: 11,639,652
effective search space: 3689769684
effective search space used: 3689769684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)