GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001159-TA|BGIBMGA001159-PA|IPR007261|Vacuolar protein
sorting 36
         (401 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35538| Best HMM Match : Vps36 (HMM E-Value=3.1e-07)                 69   7e-12
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.31 
SB_42304| Best HMM Match : NHL (HMM E-Value=0)                         33   0.41 
SB_2095| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.41 
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)               32   0.95 
SB_12377| Best HMM Match : SpoU_methylase (HMM E-Value=4.3)            30   2.9  
SB_36982| Best HMM Match : adh_short (HMM E-Value=1.4e-05)             30   3.8  
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)                 30   3.8  
SB_47732| Best HMM Match : Pkinase (HMM E-Value=0.0016)                29   5.0  
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)                    29   6.7  
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)                       29   8.8  
SB_55616| Best HMM Match : Exo_endo_phos (HMM E-Value=0.032)           29   8.8  
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)                      29   8.8  
SB_17360| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-26)                 29   8.8  

>SB_35538| Best HMM Match : Vps36 (HMM E-Value=3.1e-07)
          Length = 102

 Score = 68.9 bits (161), Expect = 7e-12
 Identities = 30/52 (57%), Positives = 39/52 (75%)

Query: 346 IQENGYLTPEKLSQIANVSVLLARERLFTTERLGLACRDESIEGLAFYPNRF 397
           + + G LT E+L+  A VSV+LA+ERL  TE+ G ACRD+S+EGL FYPN F
Sbjct: 46  LDDKGSLTAEELAHFAEVSVMLAKERLLVTEKAGKACRDDSVEGLRFYPNLF 97



 Score = 39.1 bits (87), Expect = 0.006
 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 276 GGIMSLADVWCRVNRARGLELVSPEDLLNACKLLRTVDAPMSLRK 320
           GG+M+L+DV+CR NRARG+EL   +  L A +L    +  + L K
Sbjct: 26  GGMMALSDVYCRFNRARGMEL-DDKGSLTAEELAHFAEVSVMLAK 69


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 33.5 bits (73), Expect = 0.31
 Identities = 43/190 (22%), Positives = 89/190 (46%), Gaps = 13/190 (6%)

Query: 179  EEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREKQGDISEDDTVRFKSYLMS 238
            +E+ R  +  +  A +++T LM +    +  SK+   +I++    + ED     +  L +
Sbjct: 2897 KEELRQKETELHEAREEITVLMNR----IESSKD--KQIKKVMKAVCEDIEAVEEKELHA 2950

Query: 239  LGIDDPVTRDAFRSDSEYYLGLAQQVSDMMVAVLLEC--GGIMSLADVWCRVNRARGLEL 296
              +D   +  +  +D E    L  ++ +M +   LE   G +M+L D   + ++ R ++ 
Sbjct: 2951 AVVDQLDSAPSNSADREEVTRL--KIENMRMKARLEAADGKLMNLQDELHKTSKDRVIDE 3008

Query: 297  VSPEDLLNACKLLRTVDAPMSLRKFPSGACVLQLNSNRD-EEIAKSTSDMIQENGYLTPE 355
             + +D  +  K L+  +    L++    A  +QLN  +D E++ K   ++ +EN  L   
Sbjct: 3009 KTIKDKESENKTLK--EEEQDLKRRLRQADNVQLNLRKDLEDLQKEKEELRKENENLKKR 3066

Query: 356  KLSQIANVSV 365
            KLS +  V V
Sbjct: 3067 KLSIVEKVKV 3076


>SB_42304| Best HMM Match : NHL (HMM E-Value=0)
          Length = 1279

 Score = 33.1 bits (72), Expect = 0.41
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 12   FDGENYLKR-DKNVKIYDGDDKTQFIDGE----VLLTTHRLLWGKPGDIPKGLVCLSLHL 66
            F G+ +++R   ++   D D+K +F D +     LLTT R+   K G   K  V LSL L
Sbjct: 1114 FKGQEFVRRLTTSLDQVDSDEKLRFADPDDKRNTLLTTKRVYVMKVGSACKENVVLSLKL 1173

Query: 67   YYVFCLE-EESGGVFGLGGPKRIIMHLGPALPGKRP 101
            + ++  + +E  G + L   KRI       LP   P
Sbjct: 1174 HELYKTQHKEIEGTYYLELVKRIAGMQHHNLPSPHP 1209


>SB_2095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 33.1 bits (72), Expect = 0.41
 Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 205 EMVSLSKNISTKIREKQG--DISED---DTVRFKSYLMSLGIDDPVTR-DAFRSDSEYYL 258
           E    +KNI+ K ++++G  D S +     +RFK+ L  L ++  +   +  +SD++++ 
Sbjct: 57  EQYQYTKNITEKFQKQEGPADTSHNIIYSAMRFKNALDDLTLEPDIFHLNPKKSDTDWFK 116

Query: 259 GLAQQVSDMMVAVLLECGGIMSLADV 284
            + + +    V VLL C  I+++  V
Sbjct: 117 NIIRSLDICQVKVLLPCTEIVNICPV 142


>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
          Length = 909

 Score = 31.9 bits (69), Expect = 0.95
 Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 7/143 (4%)

Query: 174 IERSIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREK----QGDISEDDT 229
           +ER  E+ + A D+      +    L     E+ +L K++STK  ++    + +I + D 
Sbjct: 570 LERKREDYNTAADERRYQMAKKKDTLQATRSELETLVKDLSTKTGKERLALEKEIQKKDK 629

Query: 230 V--RFKSYLMSLGIDDPVTRDAFRSDSEYYL-GLAQQVSDMMVAVLLECGGIMSLADVWC 286
           +    K+YL  L  +D   R A   + +  +  L +Q+      + LE   +  L D   
Sbjct: 630 IYAEQKAYLHQLETEDAKIRQAVDQELDNEMSALTKQLEQNQAFLKLERLNLEELQDAKA 689

Query: 287 RVNRARGLELVSPEDLLNACKLL 309
              R   L L   ++  N  K+L
Sbjct: 690 AAIRKDELHLKEAQEKYNEVKIL 712


>SB_12377| Best HMM Match : SpoU_methylase (HMM E-Value=4.3)
          Length = 165

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 310 RTVDAPMSLRKFPSGACVLQLNSN-RDEEIAKSTSDMIQENGYLTPEKLSQIANVSVLLA 368
           +T D P  L++   GAC +Q +SN     ++  T   I  N  +    +S +   + LL+
Sbjct: 78  QTPDLPKFLQEMKEGACEIQFSSNAHSYYLSTHTKPKIVSNRLIWTPSMSLLQQATPLLS 137

Query: 369 RERLFTTERLGLA 381
             R F   RL L+
Sbjct: 138 VPRCF-ARRLTLS 149


>SB_36982| Best HMM Match : adh_short (HMM E-Value=1.4e-05)
          Length = 258

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 268 MVAVLLECGGIMSLADVWCRVNRARGLELVSPEDLLNACKLLRTVDAPMSLRK-FPSGAC 326
           M  + L  G    +   +CR   ARG   V     L  C+          LR  +P    
Sbjct: 1   MAPLALVQGASRGIGLQFCRHLLARGNGFV-----LATCRNPTNAKELQDLRSNYPKNMA 55

Query: 327 VLQLNSNRDEEIAKSTSDMIQEN 349
           + +L+++ +E+I K+T+DMI+EN
Sbjct: 56  IFELDAHNEEKI-KATADMIKEN 77


>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 1997

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 13/64 (20%), Positives = 33/64 (51%)

Query: 164  NSKIRSGIVGIERSIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREKQGD 223
            N K  S I+ + + +EEQ  A +Q+++       + M++ +E +   K    K+ +++  
Sbjct: 1200 NKKRESDIIKLRKDLEEQALAHEQAVNSMRSKQNQQMQEMQEELDQVKKTKAKLEKEKAQ 1259

Query: 224  ISED 227
            ++ +
Sbjct: 1260 LTNE 1263


>SB_47732| Best HMM Match : Pkinase (HMM E-Value=0.0016)
          Length = 318

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 215 TKIREKQGDISEDDTVRFKSYLMSLGIDDPVTRDAFRSD 253
           T I +  GD  E++  RF+SY+  L  DDP   D F+ D
Sbjct: 197 TYISDFLGDAIEENPKRFRSYIKQLKNDDPGVAD-FKVD 234


>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2653

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 168  RSGIVGIERSIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREKQGDISED 227
            ++ +   E  I E   A D SI+   + LTK + +    +  +  ++T + ++QG  +E+
Sbjct: 1356 QASLAEAESKIAELQAAYDHSIAEK-ETLTKNIAQTAARLKRASKLTTALGDEQGRWTEN 1414

Query: 228  DTVRFKSY 235
              VR  SY
Sbjct: 1415 VAVRMHSY 1422


>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3922

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 81   GLGGPKRIIMHLGPALPGKRPGPAVVSPF 109
            G  GP  +++   P  PG+RPG  VVSPF
Sbjct: 3599 GWTGPTCVLIVTAPN-PGQRPGSRVVSPF 3626


>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
          Length = 1014

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 177 SIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNIS 214
           SIEEQ    D++I+   + + K  EKAK+  ++++ +S
Sbjct: 656 SIEEQVTKVDENIAKCEEQVEKCSEKAKQTQAINEKLS 693


>SB_55616| Best HMM Match : Exo_endo_phos (HMM E-Value=0.032)
          Length = 296

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 4/124 (3%)

Query: 244 PVTRDAFRSD-SEYYLGLAQQVSDMMVAVLLECGGIMSLADVWCRVNRARGLELVSPEDL 302
           P     FR D S+ Y G+   V D+    L E         +   +NR + + + +  + 
Sbjct: 131 PSNYSVFRKDRSDGYGGVLLAVKDLSCHELYELNSDCETVWIKVSINRRKHVYIGAFYNP 190

Query: 303 LNACKLLRTVDAPMSLRKFPSGACVLQLNS--NRDEEIAKSTSDMIQENGYLTP-EKLSQ 359
            ++C+ L  +D  +S  +  SG  V+ L    N   +I   T+ + + + ++T  EKL +
Sbjct: 191 DSSCEALDELDRSLSKLQRKSGNSVIYLGGDFNLGGDICWETNTIARGSRHVTACEKLLE 250

Query: 360 IANV 363
           + ++
Sbjct: 251 MCSI 254


>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
          Length = 487

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 340 KSTSDMIQENGYLTPEKLSQIANVSVLLARERLFTTERL 378
           K+TS   ++  Y T EKL++++NV   L  ER   T R+
Sbjct: 89  KTTSQEYEDRLYKTQEKLAELSNVRQQLENERENLTIRM 127


>SB_17360| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-26)
          Length = 715

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 7/157 (4%)

Query: 116 FKDGVDTAFYKALSDAVAAKAWERQTPIDXXXXXXXXXXXXXXXXXXXNSKIRSGIVGIE 175
           +K GV T      S  VAA   +R TP+                    +     G+ G+ 
Sbjct: 506 WKPGVATP---TTSGVVAAPRKKRVTPVVKKRKVVPMGELTDTQPLIVSEDEEEGVAGVS 562

Query: 176 -RSIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREKQGDISEDDTVRFKS 234
             S EE+    ++SI  A     K ++K      +    +T+  E+    + D+   F  
Sbjct: 563 TNSTEEEEEEEEKSILAAVAPPGKKLKKVTA-TEVDSGDATRGSEESDYETVDENSCFDE 621

Query: 235 YLMSLGIDDPVTRDAFRSDSEYYLGLAQQVSDMMVAV 271
              S G DD V   A+  D+E    LA+  +   VA+
Sbjct: 622 E--SSGGDDDVFEQAYMEDAEREQHLAEDDTPSSVAL 656


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,404,508
Number of Sequences: 59808
Number of extensions: 499161
Number of successful extensions: 1254
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1245
Number of HSP's gapped (non-prelim): 20
length of query: 401
length of database: 16,821,457
effective HSP length: 84
effective length of query: 317
effective length of database: 11,797,585
effective search space: 3739834445
effective search space used: 3739834445
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)