GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001159-TA|BGIBMGA001159-PA|IPR007261|Vacuolar protein
sorting 36
         (401 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72507-14|CAA96630.2|  383|Caenorhabditis elegans Hypothetical p...   292   3e-79
U40419-2|AAK67217.1|  269|Caenorhabditis elegans Hypothetical pr...    41   0.002
AF026214-7|AAP68943.1|  640|Caenorhabditis elegans Hypothetical ...    35   0.12 
Z81030-1|CAB02703.1| 1204|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U23510-11|AAO38610.1|  444|Caenorhabditis elegans Hypothetical p...    30   2.5  
U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...    30   2.5  
AC024214-12|AAF36072.2|  370|Caenorhabditis elegans Hypothetical...    30   3.3  
Z70307-13|CAA94339.1|  354|Caenorhabditis elegans Hypothetical p...    29   7.7  
Z27079-8|CAA81595.1|  808|Caenorhabditis elegans Hypothetical pr...    29   7.7  
U53154-10|AAC25849.1|  142|Caenorhabditis elegans Hypothetical p...    29   7.7  

>Z72507-14|CAA96630.2|  383|Caenorhabditis elegans Hypothetical
           protein F17C11.8 protein.
          Length = 383

 Score =  292 bits (716), Expect = 3e-79
 Identities = 159/387 (41%), Positives = 235/387 (60%), Gaps = 21/387 (5%)

Query: 15  ENYLKRDKNVKIYDGDDK-TQFIDGEVLLTTHRLLWGKPGDIPKGLVCLSLHLYYVFCLE 73
           E  L +  +V IY+GD K T F  G   LT  R++W    D  + LV   LH   V  +E
Sbjct: 14  EELLCQAGHVGIYEGDLKQTNFEQGTASLTMQRIIWADSSDPDRRLV---LHHSLVISME 70

Query: 74  EESGGVFGLGGPKRIIMHLGPALPGKRPGPAVVSPFHYVKLSFKDGVDTAFYKALSDAVA 133
           +    +F  GG  +I++ L     G   GP   S +  ++L F+ G +  F+K   DAV 
Sbjct: 71  KHHKSMFSKGG--KIVVKLEKPKAGNI-GPVNSSHYETLRLVFRHGGEDDFFKKYEDAVR 127

Query: 134 AKAWERQTPIDXXXXXXXXXXXXXXXXXXXNSKIRS-GIVGIERSIEEQHRATDQSISVA 192
            K W+R +                      +S +RS GI GIER + E H+ T ++I+ A
Sbjct: 128 RKTWQRSS------------SGSSSSGSRASSNLRSVGISGIERRLAENHQKTHETITQA 175

Query: 193 FQDLTKLMEKAKEMVSLSKNISTKIREKQGDISEDDTVRFKSYLMSLGIDDPVTRDAF-R 251
           F D++KLME A+EMV+LSK+IS K+R ++G+ISED+T+ FKSYL+SLG+ DPVT+  F  
Sbjct: 176 FDDMSKLMETAREMVALSKSISEKVRSRKGEISEDETIAFKSYLLSLGVSDPVTKSTFVG 235

Query: 252 SDSEYYLGLAQQVSDMMVAVLLECGGIMSLADVWCRVNRARGLELVSPEDLLNACKLLRT 311
           SDSEY+  LA+++SD++   + E GG+ +L +V+CR+NRARG+EL+SPED++NAC  L  
Sbjct: 236 SDSEYFQKLAKEISDVLYEHIKENGGMCALPEVYCRINRARGMELLSPEDVMNACGALSR 295

Query: 312 VDAPMSLRKFPSGACVLQLNSNRDEEIAKSTSDMIQENGYLTPEKLSQIANVSVLLARER 371
           +++P+ L +FPSG  V+QL S   +     T + + +    +  +L++   ++V+LARER
Sbjct: 296 INSPLELHRFPSGVLVVQLKSASMDSTVGQTLEFVSKLERASANELAESLGITVILARER 355

Query: 372 LFTTERLGLACRDESIEGLAFYPNRFL 398
           L   E  GL CRD+SIEGL FYPNRF+
Sbjct: 356 LLAAEESGLICRDDSIEGLLFYPNRFM 382


>U40419-2|AAK67217.1|  269|Caenorhabditis elegans Hypothetical
           protein C27F2.5 protein.
          Length = 269

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 46/242 (19%), Positives = 100/242 (41%), Gaps = 14/242 (5%)

Query: 168 RSGIVGIERSIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREKQGDISED 227
           R G+  I++  E  ++   +   +A + L +  ++ ++   LS  +    +  + +I ++
Sbjct: 6   RIGVAAIQKKQETANKFAAKGDQMAGEQLVQFSQQLEQ---LSAGLEMFAQRHRDEIKKN 62

Query: 228 DTVR--FKSYLMSLGIDDPVTRDAFRSDS----EYYLGLAQQVSDMMVAVLLECGGIMSL 281
              R  F+    S+G+D   +   F + +    ++Y  L  Q+ ++ ++     GGIM++
Sbjct: 63  SQFRRHFQEMCASVGVDPLASSKGFWAKALGFGDFYYELGIQIVEICLSTTHINGGIMTV 122

Query: 282 ADVWCRVNRARG---LELVSPEDLLNACKLLRTVDAPMSLRKFPSGACVLQLNSNRDEEI 338
            ++  R+ R R     + +S +D+L A   L+ +     L     G  ++Q         
Sbjct: 123 EEIRNRLMRTRSRTRKDTISTDDILRAVDKLKVLGNGFELVPLGGGRFLVQSVPGELSMD 182

Query: 339 AKSTSDMIQENGYLTPEKLSQIANVSVLLARERLFTTERLGLACRDESIEGLA--FYPNR 396
                 + ++  Y+T E +          A   L    + GLA  DE        ++P+ 
Sbjct: 183 HSRVLQLAEDAAYVTKELIIDKLRWDEARASSALEHLVKEGLAWTDEQASDTTQYWFPSL 242

Query: 397 FL 398
           FL
Sbjct: 243 FL 244


>AF026214-7|AAP68943.1|  640|Caenorhabditis elegans Hypothetical
           protein F52H2.1 protein.
          Length = 640

 Score = 34.7 bits (76), Expect = 0.12
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 193 FQDLTKLMEKAKEMVSLSKNISTKIREKQGDISEDDTVRFKSYLMSLGIDDPVTRDAFRS 252
           F D  ++ E   +   ++  ++ KIRE  GD+S    +       S+ +DDPV R+ +  
Sbjct: 396 FNDAQQIFEMLNQAAEIAHKMNEKIREANGDMSRMPVLE-PPPTFSICLDDPVFRELYPL 454

Query: 253 DSEYYLGLAQQV 264
             + Y+   QQ+
Sbjct: 455 HLQNYVYPVQQL 466


>Z81030-1|CAB02703.1| 1204|Caenorhabditis elegans Hypothetical
           protein C01G10.1 protein.
          Length = 1204

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 19/88 (21%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 289 NRARGLELVSPEDLLNACKLLRTVDAPMSLRKFPSGACVLQLNSNRDEEIAKSTSDM--I 346
           ++ RG+     ++ +   ++L  ++A +++R+F     VL++N   D E+AK  + +  +
Sbjct: 546 SQLRGISKCLSQEFMQPLRVLEVIEAMITVRQFAGNKTVLKMNQYLD-ELAKVKNQLWKV 604

Query: 347 QENGYLTPEKLSQIANVSVLLARERLFT 374
           ++   L   + +   N+ + L    LFT
Sbjct: 605 EKQIKLITSQSNSSHNLVLKLKTPELFT 632


>U23510-11|AAO38610.1|  444|Caenorhabditis elegans Hypothetical
           protein R12C12.1b protein.
          Length = 444

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 51  KPGDIPKGLVCLSLHLYYVFCLEEESGGVFGLGGPKRIIMHLGPALPG 98
           +PGD    +  L+LH    FC+    GG  G+G P  +  HL P LPG
Sbjct: 181 RPGDYGSDVSHLNLHK--TFCIPHGGGGP-GVG-PIGVKKHLAPFLPG 224


>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
           protein R12C12.1a protein.
          Length = 979

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 51  KPGDIPKGLVCLSLHLYYVFCLEEESGGVFGLGGPKRIIMHLGPALPG 98
           +PGD    +  L+LH    FC+    GG  G+G P  +  HL P LPG
Sbjct: 716 RPGDYGSDVSHLNLHK--TFCIPHGGGGP-GVG-PIGVKKHLAPFLPG 759


>AC024214-12|AAF36072.2|  370|Caenorhabditis elegans Hypothetical
           protein Y77E11A.2 protein.
          Length = 370

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 18/71 (25%), Positives = 32/71 (45%)

Query: 178 IEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREKQGDISEDDTVRFKSYLM 237
           I E   A   + +++  D   + +K+  ++  +   ST        I E+ T      L 
Sbjct: 211 IGEDEAAKVSTYNISIDDSQTVKQKSSGLIVSTGTGSTSWYLGMNRIDENATTSVLEALQ 270

Query: 238 SLGIDDPVTRD 248
           SLG+D P+TR+
Sbjct: 271 SLGVDVPITRN 281


>Z70307-13|CAA94339.1|  354|Caenorhabditis elegans Hypothetical
           protein C39E9.13 protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 300 EDLLNACKLLRTVDA-PMSLRKFPSGACVLQLNSNRDEEIAKSTSDMIQENGYLTPEK-L 357
           E   N CK++ + ++    +    S   ++ + +  DE++ K    +I+   +L PE  L
Sbjct: 155 EKYANNCKIVLSCESLSRIIEPLQSRCIIINVPAPTDEDVTKVLRKVIERESFLLPENVL 214

Query: 358 SQIANVSVLLARERLFTTERL 378
            +I   S    R  +  TE L
Sbjct: 215 QKIVEKSEGNLRRAILMTEAL 235


>Z27079-8|CAA81595.1|  808|Caenorhabditis elegans Hypothetical
           protein T05G5.8 protein.
          Length = 808

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 172 VGIERSIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSK-NISTKIRE--KQGDISEDD 228
           V I +  E  +  T+QS+ V  QD+    + A + +S  K +I  +I +     D   D+
Sbjct: 520 VDISQETEAFYSITNQSLQVLVQDVESTCDAALQSISKVKCSIFVRIEKTWTAVDCVGDE 579

Query: 229 TVRFKSYLMSLGIDDPVTRDAFRSDSEYY----LGLAQQVSDMMVAVLLEC 275
           +    S    L    P+ RD      +Y+    L LA Q++   V  L  C
Sbjct: 580 SPFIGSMRAHLRQAVPLIRDMLSDRRKYFAHFCLKLATQLAHKFVGSLFRC 630


>U53154-10|AAC25849.1|  142|Caenorhabditis elegans Hypothetical
           protein C33G8.3 protein.
          Length = 142

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 164 NSKIRSGIVGIERS-IEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREKQG 222
           N  + S +  +E + ++   RA+D  +     ++ + +EK K+ +  +K    K  +K+G
Sbjct: 24  NVDLESDVAEMEGAELDRVKRASDHKLEKKLDEIMEKVEKIKDKIEENKEKREKKNKKKG 83

Query: 223 DISEDD 228
           +  ++D
Sbjct: 84  NKKDED 89


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,237,375
Number of Sequences: 27539
Number of extensions: 386156
Number of successful extensions: 969
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 961
Number of HSP's gapped (non-prelim): 12
length of query: 401
length of database: 12,573,161
effective HSP length: 83
effective length of query: 318
effective length of database: 10,287,424
effective search space: 3271400832
effective search space used: 3271400832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)