Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001158-TA|BGIBMGA001158-PA|IPR010285|Protein of unknown
function DUF889, eukaryote
         (131 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    28   0.54 
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    27   1.3  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   3.8  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    25   5.1  
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom...    24   6.7  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    24   8.9  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    24   8.9  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    24   8.9  

>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 27.9 bits (59), Expect = 0.54
 Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 22  GEDRMAKDGNGMITLDREFC--NVVHNPDDLNNFVYSELLTNMRNRDWLCERAILAPTNE 79
           G++   +D  G +   +  C  NV+ + ++LN+ +          R+W   + +L P++E
Sbjct: 32  GKEMCEEDVIGSMAYAKALCQKNVI-SEEELNSILKG---LEQIQREWNSGQFVLEPSDE 87

Query: 80  MVGQINEQIMSRVEGDI 96
            V   NE+ ++ + GD+
Sbjct: 88  DVHTANERRLTEIIGDV 104


>SPAC3C7.09 |set8||lysine methyltransferase Set8
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 13 QYAAALLKIGEDRMAKDGNGMITLDREFCNVVHNPDDLNNFVYSELLTNMRNR-DWLCER 71
          Q+A    +I   ++ K GNG+ +L+R     V     L N +  + +   RN  D     
Sbjct: 11 QFAPGAKQITIKKIRKKGNGIFSLNRYTSGTVLLEVPLENIICRKTVEQFRNSCDKFASI 70

Query: 72 AILAPTNEM 80
          A L   N+M
Sbjct: 71 ATLEEWNDM 79


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 30  GNGMITLDREFCNVVHNPDDLNNFVYSELLTNMRNR 65
           G G+ TL R F ++  N DD+  +    L+  + +R
Sbjct: 123 GKGISTLTRSFADMQDNWDDIEGYYKVVLMEELDSR 158


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 69  CERAILAPTNEMVGQINEQIMS 90
           C+  ILAPT E+  QI + +++
Sbjct: 88  CQALILAPTRELAQQIQKVVVA 109


>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 28  KDGNGMITLDREFCNVVHNPDDLNNFVYSELLTNMRNR 65
           K  + ++ +   F NV  +PDD N    + +L N + R
Sbjct: 343 KRAHALLEIGTIFSNVEADPDDPNRIFENLILENKKKR 380


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)

Query: 90  SRVEGDIVEFLSVDT 104
           SR  GDIV ++SVDT
Sbjct: 349 SRSVGDIVNYMSVDT 363


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 39  EFCNVVHNPDDLNNFVYSELLTNMR 63
           E+ N +  P D    VY E L NMR
Sbjct: 187 EYRNELMPPPDAEQLVYIEALRNMR 211


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 10/15 (66%), Positives = 13/15 (86%)

Query: 73  ILAPTNEMVGQINEQ 87
           ILAPT E+V QI+E+
Sbjct: 260 ILAPTRELVCQIHEE 274


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,522
Number of Sequences: 5004
Number of extensions: 21436
Number of successful extensions: 51
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 8
length of query: 131
length of database: 2,362,478
effective HSP length: 66
effective length of query: 65
effective length of database: 2,032,214
effective search space: 132093910
effective search space used: 132093910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)