Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001158-TA|BGIBMGA001158-PA|IPR010285|Protein of unknown
function DUF889, eukaryote
         (131 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20782| Best HMM Match : OGFr_III (HMM E-Value=2.5)                  28   2.8  
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_4039| Best HMM Match : Herpes_US9 (HMM E-Value=6.1)                 27   3.8  
SB_51279| Best HMM Match : Filament (HMM E-Value=0.092)                27   6.6  
SB_41909| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)                     27   6.6  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_19826| Best HMM Match : DUF889 (HMM E-Value=0.053)                  26   8.7  

>SB_20782| Best HMM Match : OGFr_III (HMM E-Value=2.5)
          Length = 251

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 93  EGDIVEFLSVDTVMDTEQVTSYPVEFLNSLELSGVP 128
           EGDIV   S   V +TE  T+  +E+L  L  + +P
Sbjct: 30  EGDIVPKSSAAAVQETEAETNDIIEYLRRLSKTTIP 65


>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 44  VHNPDDLNNFVYSELLTNMRNRDWLCERAILAPTNEMVGQIN 85
           V N  DL+N  YS+LL          E+  + P N    QIN
Sbjct: 219 VRNTTDLSNVTYSDLLLPEARCSISNEKGYICPANFYCAQIN 260


>SB_4039| Best HMM Match : Herpes_US9 (HMM E-Value=6.1)
          Length = 337

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 29  DGNGMITLDREFCNVVHNPDDLNNFVYSELLTNMRNRDWLCERAILAPTNEMV 81
           D    +TL  E C+     D + +F+Y  + +  R R   C R      +E V
Sbjct: 257 DTENTLTLSGEHCDFTDTEDTVADFLYRHISSRERRRALRCPRLASLDLSEPV 309


>SB_51279| Best HMM Match : Filament (HMM E-Value=0.092)
          Length = 778

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 57  ELLTNMRNRDWLCERAILAPTNEMVGQINEQIMSRVEGDIVEFL 100
           E+L N R R W  +   +A T E + Q+  +   R+E D   FL
Sbjct: 462 EVLQNDRARRWGDKMDEMADTRERLAQLMMETFQRLESDTGIFL 505


>SB_41909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 890

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 5  LHNDVQSGQYAAALLKIGEDRMAKDG---NGMITLDREFCNVVHNPDDLNNFVYSEL 58
          +  DV+ G Y+A  LK  ED  A DG    G++T  RE      +P  LN++   +L
Sbjct: 33 IDRDVKYGAYSAKRLKGIEDSYAIDGRSEGGLVTHTREINFETMHP--LNSYAGGQL 87


>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 54  VYSELLTNMRNRDWL--CERAILAPTNEMVGQINEQIMS 90
           +  E+ TN ++++    C+  +LAPT E+  QI + +++
Sbjct: 143 ILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLA 181


>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
          Length = 2568

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 49   DLNNFVYSELLTNMRNRDWLCERAILAPTNEMVGQIN-EQIMSRVEGDIVEFLSVDTVMD 107
            D+  + Y  LLT+     WL E A  A  N    Q++ E I    EG IV  LS + +  
Sbjct: 1703 DVGYYEYPPLLTDASPEYWLLEGAWPAVFNRAAVQMHGELIEGPREGYIVVHLSGEKIRG 1762

Query: 108  TE 109
             E
Sbjct: 1763 VE 1764


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 48   DDLNNFVYSELLTNMRNRDWLCERAILA 75
            D    FV+ EL   MR R++LC+  ILA
Sbjct: 3563 DRFRRFVFREL-NEMRKREFLCDVIILA 3589


>SB_19826| Best HMM Match : DUF889 (HMM E-Value=0.053)
          Length = 203

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 78  NEMVGQINEQIMSRVEGDIVEFLSVDT 104
           N  V ++N Q ++ ++GD  E+L+ DT
Sbjct: 48  NVQVNEVNAQHLASLQGDAEEYLARDT 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,014,423
Number of Sequences: 59808
Number of extensions: 144664
Number of successful extensions: 321
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 9
length of query: 131
length of database: 16,821,457
effective HSP length: 75
effective length of query: 56
effective length of database: 12,335,857
effective search space: 690807992
effective search space used: 690807992
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)