GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001158-TA|BGIBMGA001158-PA|IPR010285|Protein of unknown
function DUF889, eukaryote
         (131 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   4.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   5.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   7.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    20   7.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   7.8  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 69  CERAILAPTNEMVGQ 83
           C+R +L PT++M+ Q
Sbjct: 341 CDRVLLNPTDKMLVQ 355


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 76  PTNEMVGQINEQIMSRVEGD 95
           PT+  +G  N  + S+VEG+
Sbjct: 208 PTDFSMGVKNNHVSSKVEGN 227


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
          ion channel subunit protein.
          Length = 391

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 24 DRMAKDGNGMITLDREFCNVVHNPD 48
          D + ++G+  +TL  EF + +  PD
Sbjct: 51 DYIFEEGDDYVTLPPEFFDSLWQPD 75


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 44  VHNPDDLNNFVYSELLTNMRNRDW 67
           +HN ++ NN  Y+    N  N ++
Sbjct: 323 IHNNNNYNNNNYNNNYNNYNNNNY 346


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 40  FCNVVHNPDDLNNFVYSELLTNMRNRDWLCERAILAPTNEMVGQINEQIMSRV 92
           FC+VV    D      +EL+  M N+     + +LA  +     I  +++ ++
Sbjct: 340 FCSVVVIAADRPGLRNTELVERMHNKLRNALQTVLAQNHPQHPDILRELLKKI 392


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,672
Number of Sequences: 429
Number of extensions: 1615
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 131
length of database: 140,377
effective HSP length: 51
effective length of query: 80
effective length of database: 118,498
effective search space:  9479840
effective search space used:  9479840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)