Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001157-TA|BGIBMGA001157-PA|IPR001781|LIM, zinc-binding
(226 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 42 4e-04
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 38 0.007
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 36 0.035
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 35 0.062
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 34 0.11
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 33 0.14
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955... 33 0.25
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876... 32 0.33
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833... 32 0.44
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 32 0.44
01_03_0012 + 11638363-11638476,11638854-11640678,11641855-116420... 31 1.0
09_02_0565 + 10710770-10711003,10711368-10711527,10712277-107124... 29 3.1
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 29 4.1
06_03_0347 + 19783824-19784348 29 4.1
02_02_0262 - 8396755-8397244,8398659-8398705 29 4.1
02_02_0175 - 7465951-7466019,7466410-7466492,7467126-7467289,746... 29 4.1
05_06_0134 + 25912474-25912561,25912678-25913230,25914063-259145... 28 5.4
06_03_0367 - 19938941-19939324 28 7.1
06_03_0343 + 19750914-19751047,19752091-19752676 28 7.1
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 41.9 bits (94), Expect = 4e-04
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 34 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGE 72
++CAGC I + L +D +WH C +C CD + E
Sbjct: 176 RVCAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISE 214
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 37.9 bits (84), Expect = 0.007
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGE 72
CAGC I L +D +WH C +C C+ + E
Sbjct: 257 CAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISE 293
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 93 LFGNTGY--CAACNKVIPAFEMVMRARSNVYHLECFACQQCN 132
LF ++G CA C I + +V+H +CF C CN
Sbjct: 248 LFASSGSRTCAGCKNPI-GHGRFLSCMDSVWHPQCFRCFACN 288
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 35.5 bits (78), Expect = 0.035
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 34 QICAGCSKVITERYLLKALDQLWHEDCLKCGCC 66
++C GC I + L L WH C +C C
Sbjct: 112 RVCGGCKHEIGHGHYLSCLGMYWHPQCFRCSSC 144
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 34.7 bits (76), Expect = 0.062
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCD 67
CAGC I L + +WH +C +C C+
Sbjct: 558 CAGCHSEIGHGRFLSCMGAVWHPECFRCHACN 589
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 100 CAACNKVIPAFEMVMRARSNVYHLECFACQQCN 132
CA C+ I + V+H ECF C CN
Sbjct: 558 CAGCHSEI-GHGRFLSCMGAVWHPECFRCHACN 589
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 95 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQC 131
G T C AC+K + + + A + VYH CF C C
Sbjct: 7 GTTTKCMACDKTVYLVDK-LTADNRVYHKACFRCHHC 42
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
C GC+K + + + ++H+ C KC C + + + + CK +++L
Sbjct: 110 CVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAH--EGKLYCKHHHIQLIK 167
Query: 96 NTG 98
G
Sbjct: 168 EKG 170
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
C C K + L A ++++H+ C +C C L + + ++ C+ + +LF
Sbjct: 12 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSF--EGVLYCRPHFDQLFK 69
Query: 96 NTG 98
TG
Sbjct: 70 RTG 72
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
C C K + LL A +H+ C KC C L ++ + ++ CK + +LF
Sbjct: 10 CKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYS--SMDGVLYCKTHFEQLFK 67
Query: 96 NTG 98
TG
Sbjct: 68 ETG 70
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
CA C K + L + +H+ C KC C L + ++ CK + +LF
Sbjct: 106 CAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILTTSSYAALN--GILYCKIHFSQLFK 163
Query: 96 NTG 98
G
Sbjct: 164 EKG 166
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 95 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQC 131
G C AC+K + ++ + A YH CF C C
Sbjct: 5 GTQDKCKACDKTVHFIDL-LTADGVSYHKTCFKCSHC 40
>04_04_0611 -
26594737-26594991,26595307-26595396,26595490-26595515,
26595603-26595702,26595820-26595954
Length = 201
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
C C K + LL A +H+ C KC C L ++ + ++ CK + +LF
Sbjct: 10 CTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYS--SMDGVLYCKTHFEQLFK 67
Query: 96 NTG 98
TG
Sbjct: 68 ETG 70
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 95 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQC 131
G C AC+K + ++ + A YH CF C C
Sbjct: 5 GTQDKCTACDKTVHFIDL-LTADGVPYHKTCFKCSHC 40
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
CA C K + L + +H+ C KC C L + ++ CK + +LF
Sbjct: 105 CAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILTTSSYAALN--GVLYCKIHFGQLFM 162
Query: 96 NTG 98
G
Sbjct: 163 EKG 165
>03_02_0476 +
8768182-8768313,8768734-8768833,8768949-8768986,
8769102-8769191,8769465-8769695
Length = 196
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
CA CSK + Q +H+ C KC C + + ++ CK + +LF
Sbjct: 108 CATCSKTAYPLEKVTVEGQAYHKSCFKCSHGGCAISPSNYA--ALEGILYCKHHFSQLFK 165
Query: 96 NTG 98
G
Sbjct: 166 EKG 168
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 95 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDY 154
G C C K + + + V+H CF CQ C +G+ + E C+ +
Sbjct: 4 GTQQKCKVCTKTVYPMDQ-LSTDGVVFHRSCFKCQHCKSTLSLGN-YSSIEGVPYCKPHF 61
Query: 155 EE 156
E+
Sbjct: 62 EQ 63
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 34 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRL 93
Q C C+K + L ++H C KC C L ++ + + CK + +L
Sbjct: 7 QKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYS--SIEGVPYCKPHFEQL 64
Query: 94 FGNTG 98
F TG
Sbjct: 65 FKETG 69
>10_08_0547 -
18682357-18682683,18682971-18683060,18683279-18683301,
18683397-18683496,18683615-18683749
Length = 224
Score = 31.9 bits (69), Expect = 0.44
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
C C K + LL A +H+ C +C C L ++ + ++ CK + +LF
Sbjct: 10 CNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYS--SMDGVLYCKTHFEQLFK 67
Query: 96 NTG 98
TG
Sbjct: 68 ETG 70
Score = 31.1 bits (67), Expect = 0.76
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 95 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQC 131
G C AC+K + ++ + A S YH CF C C
Sbjct: 5 GTQDKCNACDKTVHFIDL-LTADSIPYHKSCFRCSHC 40
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
C C K + + + +H C KC C L + + ++ C+ + +LF
Sbjct: 104 CTACKKTVYPLEKMTMEGECYHRTCFKCAHGGCLLTNASYASHN--GILYCQNHFWQLFK 161
Query: 96 NTG 98
+G
Sbjct: 162 KSG 164
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 31.9 bits (69), Expect = 0.44
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 95 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDY 154
G T C +C + + E + A VYH CF C C + + E + C+ Y
Sbjct: 8 GTTQKCDSCGRTVYPVEE-LAADGRVYHRPCFRCTHCKATLQFSN-YSSVEGVLYCKPHY 65
Query: 155 EERL 158
++ L
Sbjct: 66 DQIL 69
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 34 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRL 93
Q C C + + L A +++H C +C C L ++ + ++ CK Y ++
Sbjct: 11 QKCDSCGRTVYPVEELAADGRVYHRPCFRCTHCKATLQFSNYS--SVEGVLYCKPHYDQI 68
Query: 94 FGNTG 98
+TG
Sbjct: 69 LKSTG 73
>01_03_0012 +
11638363-11638476,11638854-11640678,11641855-11642096,
11642198-11642327,11642464-11642774
Length = 873
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 59 DCLKCGCCDCRLGEVGHTLYTRANL--ILCKRDYLRLFGNTGYCAAC 103
+C+ CCD G GH + NL I+C R+ L L C
Sbjct: 456 ECVYESCCDLSQGNDGHVCFCNRNLYDIICTREKLPLHLRLSIAVQC 502
>09_02_0565 +
10710770-10711003,10711368-10711527,10712277-10712477,
10712564-10712628,10712740-10712767,10712847-10712923,
10713023-10713109,10713572-10713622,10713857-10713937,
10714125-10714346,10714424-10714517,10714608-10714748,
10716383-10716444,10716519-10717106
Length = 696
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 100 CAACNKVIPAFEMVMRARSN-VYHLECFACQQCNHRFCVGDRFYLCENKILCE 151
C C + A E V+ N ++H EC H C RF LCE + +
Sbjct: 606 CTICLETFLAGEQVVATPCNHIFHQECITPWVKGHGNCPVCRFALCERNTVSD 658
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 167 PPPLAHLKRQ-TTHLPPPPVNI 187
PPP HL+R+ HLP P+N+
Sbjct: 29 PPPFPHLRRRCAPHLPSKPLNL 50
>06_03_0347 + 19783824-19784348
Length = 174
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 95 GNTGYCAACNKVIPAFEMVMR--ARSNVYHLECFACQQCNHRFC 136
G G C+ C + E V R A ++YH+EC +H C
Sbjct: 97 GGGGECSVCLGAVQGGEAVRRLPACKHLYHVECIDMWLASHATC 140
>02_02_0262 - 8396755-8397244,8398659-8398705
Length = 178
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 95 GNTGYCAACNKVIPAFEMV--MRARSNVYHLECFACQQCNHRFC 136
GN C+ C + + A E+V M A +++H+EC +HR C
Sbjct: 100 GNGEPCSVCLEELHAGEIVREMPACKHLFHVECIDMWLHSHRTC 143
>02_02_0175 -
7465951-7466019,7466410-7466492,7467126-7467289,
7467385-7467640,7467830-7467935,7467962-7468007,
7468316-7468388,7468508-7468577
Length = 288
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 61 LKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFGNTGYCAACNKVIPAFEM 112
+KC C L G + T +LC D ++ N C C++V+ M
Sbjct: 1 MKCNACWRELE--GQAVSTTCGHLLCTEDAKKILSNDAACPICDQVLSKSHM 50
>05_06_0134 +
25912474-25912561,25912678-25913230,25914063-25914556,
25914804-25914942,25915511-25915582,25915671-25915742,
25917202-25917282,25917385-25917545,25917626-25917894,
25917996-25918122,25918193-25918261,25918366-25918558,
25918605-25919046
Length = 919
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 140 RFYLCENKILCEYDYEERLVFANMAYNPPPLAH-------LKRQTTHLPPPPVNITFVFN 192
+FY+ N IL + + ++A +Y+ P + PP +N V++
Sbjct: 306 QFYININGILFDDGFTPSFLYAEASYSSKPFVRHPQYNITINATANSTMPPLINAVEVYS 365
Query: 193 VIFYTNIGIKWYHRLKVFTIK 213
VI NIG + TIK
Sbjct: 366 VISTANIGTDSQDVSAIMTIK 386
>06_03_0367 - 19938941-19939324
Length = 127
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 100 CAACNKVIPAFEMVMR--ARSNVYHLECFACQQCNHRFC 136
CA C + EMV R A +VYH +C HR C
Sbjct: 70 CAVCLGAVREGEMVRRLPACEHVYHADCIDRWLAAHRTC 108
>06_03_0343 + 19750914-19751047,19752091-19752676
Length = 239
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 100 CAACNKVIPAFEMVMR--ARSNVYHLECFACQQCNHRFC 136
CA C + EMV R A +VYH +C HR C
Sbjct: 182 CAVCLGAVREGEMVRRLPACEHVYHADCIDRWLAAHRTC 220
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.328 0.141 0.473
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,110,573
Number of Sequences: 37544
Number of extensions: 301609
Number of successful extensions: 1114
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1093
Number of HSP's gapped (non-prelim): 36
length of query: 226
length of database: 14,793,348
effective HSP length: 80
effective length of query: 146
effective length of database: 11,789,828
effective search space: 1721314888
effective search space used: 1721314888
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 58 (27.5 bits)
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