Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001157-TA|BGIBMGA001157-PA|IPR001781|LIM, zinc-binding
         (226 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.57 
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   1.8  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   1.8  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   9.3  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 120 VYHLECFACQQCNHRFCVGDRFYLCE 145
           VYHL+       NH   +G   +LCE
Sbjct: 273 VYHLDNHHVHHANHHAILGHSGFLCE 298


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
          protein.
          Length = 117

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 37 AGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLIL 85
          +G S+V  E+  +   DQ +    LKC   +     VG  L + A L+L
Sbjct: 28 SGRSRVSDEQLNMALSDQRYLRRQLKCALGEAPCDPVGRRLKSLAPLVL 76


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
          protein.
          Length = 117

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 37 AGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLIL 85
          +G S+V  E+  +   DQ +    LKC   +     VG  L + A L+L
Sbjct: 28 SGRSRVSDEQLNMALSDQRYLRRQLKCALGEAPCDPVGRRLKSLAPLVL 76


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 100 CAACNKVIPAFEMVMRARSNVY 121
           C  CNK++ +   + R   NV+
Sbjct: 5   CEPCNKILTSLTRLRRHIQNVH 26


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.141    0.473 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,425
Number of Sequences: 429
Number of extensions: 3107
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 226
length of database: 140,377
effective HSP length: 56
effective length of query: 170
effective length of database: 116,353
effective search space: 19780010
effective search space used: 19780010
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 42 (21.0 bits)