Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001157-TA|BGIBMGA001157-PA|IPR001781|LIM, zinc-binding
(226 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 41 8e-04
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 36 0.017
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 36 0.017
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 36 0.022
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 35 0.052
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 35 0.052
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 34 0.068
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 34 0.090
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 33 0.16
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 32 0.36
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 31 0.64
At2g39830.1 68415.m04892 LIM domain-containing protein contains ... 29 1.9
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 29 2.6
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family... 29 2.6
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 29 3.4
At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contai... 29 3.4
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 29 3.4
At2g27090.1 68415.m03255 expressed protein contains Pfam domains... 28 4.5
At3g18550.1 68416.m02359 TCP family transcription factor, putati... 28 5.9
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 40.7 bits (91), Expect = 8e-04
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 34 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRL 93
+ICAGC+ I L L+ LWH +C +C C + E + T N K Y
Sbjct: 170 RICAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISE--YEFSTSGNYPFHKACYRER 227
Query: 94 FGNTGYCAACNKVIP 108
+ C C+ IP
Sbjct: 228 YHPK--CDVCSHFIP 240
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 100 CAACNKVIPAFEMVMRARSNVYHLECFACQQCN 132
CA CN I + ++++H ECF C C+
Sbjct: 172 CAGCNMEI-GHGRFLNCLNSLWHPECFRCYGCS 203
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 29 NPPQPQICAGCSKVITERYLLKALDQLWHEDCLKCGCCD 67
NPP +C GC+ + + L LWH C C CD
Sbjct: 341 NPPL-SMCGGCNSAVKHEESVNILGVLWHPGCFCCRSCD 378
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 95 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDY 154
G T C AC+K + ++ M YH CF C CN + + + + + C+ +
Sbjct: 6 GTTDKCKACDKTVYVMDL-MTLEGMPYHKSCFRCSHCNGTLVICN-YSSMDGVLYCKTHF 63
Query: 155 EE 156
E+
Sbjct: 64 EQ 65
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLIL-CKRDYLRLF 94
CA C K + + + +H+ C +C C L H+ Y + +L CK + +LF
Sbjct: 107 CAACKKTVYPLEKMTMEGESYHKTCFRCAHSGCPL---THSSYAALDGVLYCKVHFSQLF 163
Query: 95 GNTG 98
G
Sbjct: 164 LEKG 167
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
C C K + L+ +H+ C +C C+ L ++ + ++ CK + +LF
Sbjct: 11 CKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYS--SMDGVLYCKTHFEQLFK 68
Query: 96 NTG 98
+G
Sbjct: 69 ESG 71
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 35.9 bits (79), Expect = 0.022
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 29 NPPQPQICAGCSKVITERYLLKALDQLWHEDCLKCGCC 66
NPP P +C GC+ + + L LWH C C C
Sbjct: 280 NPP-PSLCGGCNFAVEHGGSVNILGVLWHPGCFCCRAC 316
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 34.7 bits (76), Expect = 0.052
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 95 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDY 154
G C AC K + A E+ + A YH CF C C R + + E + C+ +
Sbjct: 5 GTQQKCKACEKTVYAVEL-LSADGVGYHKSCFKCTHCKSRLQLSS-YSSMEGVLYCKPHF 62
Query: 155 EE 156
E+
Sbjct: 63 EQ 64
Score = 34.7 bits (76), Expect = 0.052
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 34 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRL 93
Q C C K + LL A +H+ C KC C RL ++ + ++ CK + +L
Sbjct: 8 QKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYS--SMEGVLYCKPHFEQL 65
Query: 94 FGNTG 98
F +G
Sbjct: 66 FKESG 70
Score = 33.9 bits (74), Expect = 0.090
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
CA CSK + + Q +H+ C KC C + + ++ CK + +LF
Sbjct: 108 CATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYA--ALEGILYCKHHFAQLFK 165
Query: 96 NTG 98
G
Sbjct: 166 EKG 168
Score = 31.1 bits (67), Expect = 0.64
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 92 RLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFAC 128
R G CA C+K + E V S YH CF C
Sbjct: 100 RFSGTQEKCATCSKTVYPIEKVT-VESQTYHKSCFKC 135
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 34.7 bits (76), Expect = 0.052
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 95 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDY 154
G C AC+K + ++ + N YH CF C C + + + + + C+ +
Sbjct: 5 GTLDKCKACDKTVYVMDL-LTLEGNTYHKSCFRCTHCKGTLVISN-YSSMDGVLYCKPHF 62
Query: 155 EE 156
E+
Sbjct: 63 EQ 64
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLIL-CKRDYLRLF 94
CA C K + + + +H+ C +C C L H+ Y N +L CK + +LF
Sbjct: 106 CATCKKTVYPLEKVTMEGESYHKTCFRCTHSGCPL---THSSYASLNGVLYCKVHFNQLF 162
Query: 95 GNTG 98
G
Sbjct: 163 LEKG 166
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
C C K + LL +H+ C +C C L V + ++ CK + +LF
Sbjct: 10 CKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTL--VISNYSSMDGVLYCKPHFEQLFK 67
Query: 96 NTG 98
+G
Sbjct: 68 ESG 70
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 34.3 bits (75), Expect = 0.068
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 34 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRL 93
Q C C K + LL A +H+ C KC C RL ++ + ++ C+ + +L
Sbjct: 8 QKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYS--SMEGVVYCRPHFEQL 65
Query: 94 FGNTG 98
F +G
Sbjct: 66 FKESG 70
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 95 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDY 154
G C AC K + E+ + A YH CF C C R + + + E + C +
Sbjct: 5 GTQQKCRACEKTVYPVEL-LSADGISYHKACFKCSHCKSRLQLSN-YSSMEGVVYCRPHF 62
Query: 155 EE 156
E+
Sbjct: 63 EQ 64
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
CA C+K + + Q +H+ C KC C + + ++ CK + +LF
Sbjct: 109 CATCTKTVYPIEKVTVESQCYHKSCFKCSHGGCPISPSNYA--ALEGILYCKHHFAQLFK 166
Query: 96 NTG 98
G
Sbjct: 167 EKG 169
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 33.9 bits (74), Expect = 0.090
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 95 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQC 131
G T C AC+K + + + A + VYH CF C C
Sbjct: 5 GTTQKCMACDKTVYLVDK-LTADNRVYHKACFRCHHC 40
Score = 30.7 bits (66), Expect = 0.84
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
C GC K + + L+H+ C KC C + + + + CK +++L
Sbjct: 110 CVGCDKTVYPIEKVSVNGTLYHKSCFKCTHGGCTISPSNYIAH--EGKLYCKHHHIQLIK 167
Query: 96 NTG 98
G
Sbjct: 168 EKG 170
>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
to CREB-binding protein GB:AAC51770 GI:2443859 from
[Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
profile; contains Pfam PF00569: Zinc finger, ZZ type
domain; identical to histone acetyltransferase HAC4
(GI:14794966) {Arabidopsis thaliana}
Length = 1456
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 109 AFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYL 143
A + +AR V H++C C +R+C+G R +L
Sbjct: 444 ASKFCFQARKIVKHIDCCKVPNCKYRYCLGTRMWL 478
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 31.9 bits (69), Expect = 0.36
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 35 ICAGCSKVITERYLLKALDQLWHEDCLKCGCCD 67
IC GC I + AL WH +C C CD
Sbjct: 200 ICDGCKSAIEYGRSVHALGVNWHPECFCCRYCD 232
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 31.1 bits (67), Expect = 0.64
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLIL-CKRDYLRLF 94
CA C K + ++ + +H+ C +C C L H+ Y + +L C+ + +LF
Sbjct: 104 CAACEKTVYPLEKIQMEGECFHKTCFRCAHGGCTL---THSSYASLDSVLYCRHHFNQLF 160
Query: 95 GNTG 98
G
Sbjct: 161 MEKG 164
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 95 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDY 154
G C C+K + +M + YH CF C C + + + + + C+ +
Sbjct: 5 GTLDKCNVCDKTVYVVDM-LSIEGMPYHKSCFRCTHCKGTLQMSN-YSSMDGVLYCKTHF 62
Query: 155 EERL-VFANMAYNPPPLAHLKRQTTHLP 181
E+ N + N P K + T P
Sbjct: 63 EQLFKESGNFSKNFQPGKTEKPELTRTP 90
>At2g39830.1 68415.m04892 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 503
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 34 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGE 72
+IC GC+ I L + +H +C +C C + E
Sbjct: 160 RICGGCNSDIGSGNYLGCMGTFFHPECFRCHSCGYAITE 198
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 165 YNPPPLAHLKRQTTHLPPPPVNI 187
Y+PPP H H PPPP +
Sbjct: 580 YSPPPPVHSPPPPVHSPPPPAPV 602
>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 185
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 139 DRFYLCENKILCEYDYEERLVFANMAYNPPPLAHLKRQTT 178
+ F N I Y++ RL A PPP HL+R+TT
Sbjct: 22 NNFIPTTNTINHHYNHRRRLTTAAGQPPPPPANHLRRRTT 61
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 165 YNPPPLAHLKRQTTHLPPPPVN 186
++PPP H H PPPPV+
Sbjct: 690 HSPPPPVHSPPPPVHSPPPPVH 711
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 165 YNPPPLAHLKRQTTHLPPPPVN 186
++PPP H H PPPPV+
Sbjct: 697 HSPPPPVHSPPPPVHSPPPPVH 718
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 165 YNPPPLAHLKRQTTHLPPPPVN 186
++PPP H H PPPPV+
Sbjct: 704 HSPPPPVHSPPPPVHSPPPPVH 725
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 165 YNPPPLAHLKRQTTHLPPPPVN 186
++PPP H H PPPPV+
Sbjct: 772 HSPPPPVHSPPPPVHSPPPPVH 793
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 165 YNPPPLAHLKRQTTHLPPPPVN 186
++PPP H H PPPPV+
Sbjct: 779 HSPPPPVHSPPPPVHSPPPPVH 800
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 165 YNPPPLAHLKRQTTHLPPPPV 185
++PPP H H PPPPV
Sbjct: 711 HSPPPPVHSPPPPVHSPPPPV 731
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 167 PPPLAHLKRQTTHLPPPPVN 186
PPP H H PPPPV+
Sbjct: 685 PPPPVHSPPPPVHSPPPPVH 704
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 167 PPPLAHLKRQTTHLPPPPVN 186
PPP H H PPPPV+
Sbjct: 767 PPPPVHSPPPPVHSPPPPVH 786
>At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contains
weak similarity to Ubiquitin-protein ligase E3 Mdm2 (EC
6.3.2.-) (p53-binding protein Mdm2) (Oncoprotein Mdm2)
(Double minute 2 protein) (Swiss-Prot:P23804) [Mus
musculus]
Length = 785
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 58 EDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFGNTGYCAACN-KVIPAFEMVMRA 116
E+ K CC C +V LY ++ C R L N G C C+ K++ + + +
Sbjct: 724 ENPFKRKCCVCNETQVETLLYRCGHMCTCLRCANELQYNGGKCPICHAKILDVVRVFVDS 783
Query: 117 RS 118
R+
Sbjct: 784 RT 785
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 165 YNPPPLAHLKRQTTHLPPPPVN 186
++PPP H H PPPPV+
Sbjct: 543 HSPPPPVHSPPPPVHSPPPPVH 564
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 165 YNPPPLAHLKRQTTHLPPPPVN 186
++PPP H H PPPPV+
Sbjct: 550 HSPPPPVHSPPPPVHSPPPPVH 571
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 165 YNPPPLAHLKRQTTHLPPPPVN 186
++PPP H H PPPPV+
Sbjct: 557 HSPPPPVHSPPPPVHSPPPPVH 578
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 165 YNPPPLAHLKRQTTHLPPPPV 185
++PPP H H PPPPV
Sbjct: 564 HSPPPPVHSPPPPVHSPPPPV 584
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 165 YNPPPLAHLKRQTTHLPPPPV 185
++PPP H H PPPPV
Sbjct: 593 HSPPPPVHSPPPPVHSPPPPV 613
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 167 PPPLAHLKRQTTHLPPPPVN 186
PPP H H PPPPV+
Sbjct: 538 PPPPVHSPPPPVHSPPPPVH 557
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 167 PPPLAHLKRQTTHLPPPPVN 186
PPP H H PPPPV+
Sbjct: 588 PPPPVHSPPPPVHSPPPPVH 607
>At2g27090.1 68415.m03255 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 743
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 161 ANMAYNPPPLAHLKRQTTHLPPPPVNITFVFNV 193
++++Y+PPP +H T+ PPP T F V
Sbjct: 86 SHLSYSPPPASH-SHHDTYSPPPSPPSTSPFQV 117
>At3g18550.1 68416.m02359 TCP family transcription factor, putative
similar to teosinte branched1 protein GI:13649866
[Danthoniopsis dinteri]
Length = 434
Score = 27.9 bits (59), Expect = 5.9
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 115 RARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFANMAYNP----PPL 170
R++ N E C+ C DRF +C I+ + D+ + + Y P P +
Sbjct: 335 RSQVNRSSFEMTHCEDKIEELCKNDRFAVCNEFIMNKKDHISNESYDLVNYKPNSSFPVI 394
Query: 171 AHLKRQ----TTHLPPPPVNITFVFNVIFYTNIGIKWYH 205
H + Q + +P + +TF+ + F+ + K H
Sbjct: 395 NHHRSQGAANSIEVPYLYLRVTFIIFMSFFPMVLSKAIH 433
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.328 0.141 0.473
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,638,288
Number of Sequences: 28952
Number of extensions: 242355
Number of successful extensions: 979
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 904
Number of HSP's gapped (non-prelim): 77
length of query: 226
length of database: 12,070,560
effective HSP length: 79
effective length of query: 147
effective length of database: 9,783,352
effective search space: 1438152744
effective search space used: 1438152744
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 58 (27.5 bits)
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