Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001157-TA|BGIBMGA001157-PA|IPR001781|LIM, zinc-binding
(226 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20426| Best HMM Match : LIM (HMM E-Value=3e-35) 175 3e-44
SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43) 124 8e-29
SB_15482| Best HMM Match : LIM (HMM E-Value=0) 121 6e-28
SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42) 113 1e-25
SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40) 101 4e-22
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 9e-15
SB_31712| Best HMM Match : LIM (HMM E-Value=9e-26) 69 3e-12
SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16) 58 6e-09
SB_13716| Best HMM Match : LIM (HMM E-Value=0) 58 8e-09
SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_9083| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 50 2e-06
SB_30367| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 49 4e-06
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22) 46 3e-05
SB_57744| Best HMM Match : LIM (HMM E-Value=4.3e-15) 44 1e-04
SB_40829| Best HMM Match : LIM (HMM E-Value=1.7e-14) 41 0.001
SB_48571| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_29029| Best HMM Match : C1_1 (HMM E-Value=1) 35 0.048
SB_5263| Best HMM Match : C1_1 (HMM E-Value=1) 35 0.048
SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34) 35 0.063
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 34 0.083
SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_13721| Best HMM Match : C1_1 (HMM E-Value=1.1) 33 0.15
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0) 33 0.19
SB_57743| Best HMM Match : LIM (HMM E-Value=1.7e-08) 32 0.34
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28) 32 0.44
SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_3515| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14) 29 4.1
SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 7.2
SB_57460| Best HMM Match : Folate_rec (HMM E-Value=0.03) 28 7.2
SB_29198| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_28915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14) 27 9.6
SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_20426| Best HMM Match : LIM (HMM E-Value=3e-35)
Length = 160
Score = 175 bits (425), Expect = 3e-44
Identities = 70/121 (57%), Positives = 93/121 (76%)
Query: 30 PPQPQICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRD 89
P + ++C C++ I+++Y+L+AL WHE CLKC CCD RLG++G +LY++ANLILCKRD
Sbjct: 11 PVERRLCRSCNEPISDKYVLQALGSYWHEGCLKCECCDSRLGDIGSSLYSKANLILCKRD 70
Query: 90 YLRLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKIL 149
YLRLFG G C+ CNK I AFE+VMRAR+N YH+ECF CQ+C R VG+ F +NK+L
Sbjct: 71 YLRLFGIPGVCSHCNKPIAAFELVMRARNNAYHIECFGCQRCRKRLVVGEAFCFHDNKVL 130
Query: 150 C 150
C
Sbjct: 131 C 131
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 100 CAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFC-VGDRFYLCENKILCEYDY 154
C +CN+ I + + V++A + +H C C+ C+ R +G Y N ILC+ DY
Sbjct: 17 CRSCNEPI-SDKYVLQALGSYWHEGCLKCECCDSRLGDIGSSLYSKANLILCKRDY 71
>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
Length = 511
Score = 124 bits (298), Expect = 8e-29
Identities = 56/127 (44%), Positives = 78/127 (61%), Gaps = 2/127 (1%)
Query: 32 QPQICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYL 91
Q +CAGC I ER+ L A+DQ WH DCLKC C+ RL T +++ +ILC+ DY
Sbjct: 244 QQAVCAGCGSRILERFYLMAVDQEWHADCLKCSDCELRLDNE-LTCFSKDGVILCREDYY 302
Query: 92 RLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCE 151
R F + C++C++ I + E+VMRAR VYH+ CFAC +C G+ F + +I C+
Sbjct: 303 RRF-SVKKCSSCSQAISSKELVMRARDQVYHVNCFACDRCKRMLATGEYFGMRGIRIYCK 361
Query: 152 YDYEERL 158
DYEE L
Sbjct: 362 EDYEELL 368
>SB_15482| Best HMM Match : LIM (HMM E-Value=0)
Length = 349
Score = 121 bits (291), Expect = 6e-28
Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 5/120 (4%)
Query: 35 ICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLF 94
IC GC++ I +R+L+K +D+ WHE CL+C C CR ++ + +++ + C+ DY ++F
Sbjct: 45 ICTGCNEPIEDRFLMKVVDEAWHESCLQC--CICR-SQLSRSCFSKDRKLYCRTDYEKVF 101
Query: 95 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDY 154
G C+ C K IPA E+VMRA NVYHL CF C C H G F L +NK+ C+ D+
Sbjct: 102 GTK--CSGCKKTIPANELVMRALGNVYHLHCFVCTMCGHILEKGQEFALKDNKLYCKADF 159
>SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42)
Length = 328
Score = 113 bits (271), Expect = 1e-25
Identities = 54/127 (42%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Query: 32 QPQICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYL 91
Q + C GC I +RYL+K + WH CLKC C LG T YT+ I CK DY
Sbjct: 98 QGERCVGCEAKIVDRYLVKVSGRAWHTKCLKCCLCSDELGREA-TCYTKDGKIYCKADYA 156
Query: 92 RLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCE 151
R FG CA C + I A + V RA++ VYHL CFAC C + G+ F L + +LC+
Sbjct: 157 RQFGTK--CARCGRSIHANDWVRRAKNCVYHLACFACDNCKRQLSTGEEFALKDGHVLCK 214
Query: 152 YDYEERL 158
Y E L
Sbjct: 215 LHYLEAL 221
>SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)
Length = 434
Score = 101 bits (243), Expect = 4e-22
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 34 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRL 93
Q CAGC I +++LLK LD +WH C++C C C L E ++R + CK D+ R
Sbjct: 3 QQCAGCQLPIADKFLLKVLDGVWHAQCVQCSDCKCPLTE---RCFSREGKLFCKTDFYRR 59
Query: 94 FGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDR-FYLCENKILCEY 152
+G C+ C++ I +MV RA+ V+H++CF C C + GD +Y+ + +C
Sbjct: 60 YGTK--CSGCDQGISPNDMVRRAKHLVFHVDCFVCSYCKRQITTGDELYYIGDGSFICRD 117
Query: 153 DY 154
DY
Sbjct: 118 DY 119
>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 77.4 bits (182), Expect = 9e-15
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 92 RLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCE 151
+L+GN+G CA C K+IPA E+VM+ VYHL CF C C+++ GDRF++ ++ CE
Sbjct: 700 KLYGNSGACAVCAKLIPATELVMKVLGKVYHLHCFTCTTCHNQLVPGDRFHVVNGRLFCE 759
Query: 152 YD 153
D
Sbjct: 760 ND 761
>SB_31712| Best HMM Match : LIM (HMM E-Value=9e-26)
Length = 481
Score = 68.9 bits (161), Expect = 3e-12
Identities = 28/55 (50%), Positives = 34/55 (61%)
Query: 100 CAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDY 154
C+ C K IPA E+VMRA NVYHL CF C C H G F L +NK+ C+ D+
Sbjct: 7 CSGCKKTIPANELVMRALGNVYHLHCFVCTMCGHILEKGQEFALKDNKLYCKADF 61
>SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16)
Length = 339
Score = 58.0 bits (134), Expect = 6e-09
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 93 LFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEY 152
LFG CA C+ + VMRAR+ +YH++CF C C+ + GD F L E+ + C+
Sbjct: 79 LFGTK--CAKCSLNFSKNDFVMRARNKIYHIDCFRCVACSRQLVPGDEFALREDGLFCKA 136
Query: 153 DYE 155
D+E
Sbjct: 137 DHE 139
Score = 34.3 bits (75), Expect = 0.083
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 36 CAGCSKVITER-YLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDY 90
CA CS ++ ++++A ++++H DC +C C +L G R + + CK D+
Sbjct: 84 CAKCSLNFSKNDFVMRARNKIYHIDCFRCVACSRQL-VPGDEFALREDGLFCKADH 138
>SB_13716| Best HMM Match : LIM (HMM E-Value=0)
Length = 401
Score = 57.6 bits (133), Expect = 8e-09
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 35 ICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLF 94
+CA C+K I + + AL + WH + C C+ LG + R C+RDY F
Sbjct: 281 MCAACNKPIIGQ-VCTALGKTWHPEHFACVACEAPLGT--QNFFERDGKPYCERDYHDTF 337
Query: 95 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDR-FYLCENKILCEYD 153
CA CN P + + A +H E F C +C + F GD F+ + K C D
Sbjct: 338 APR--CAYCNG--PILDSCVTALDQTWHPEHFVCAECGNPF--GDTGFHERDGKPFCRED 391
Query: 154 Y 154
Y
Sbjct: 392 Y 392
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 98 GYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEE 156
G CAACNK P V A +H E FAC C F+ + K CE DY +
Sbjct: 280 GMCAACNK--PIIGQVCTALGKTWHPEHFACVACEAPLGT-QNFFERDGKPYCERDYHD 335
Score = 35.9 bits (79), Expect = 0.027
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLF 94
CA C+ I + + ALDQ WH + C C G+ G + R C+ DY +F
Sbjct: 341 CAYCNGPILDS-CVTALDQTWHPEHFVCAECGNPFGDTG--FHERDGKPFCREDYYAMF 396
>SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 48 LLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFGNTGY-----CAA 102
++KA+ WH DC +C C+ L + G + + + + +++ G+ + C
Sbjct: 25 VIKAMQANWHPDCFRCEICNDCLADTGF-VKNAGSTYIPEGEHIMYMGDPVHPWHYNCFC 83
Query: 103 CNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEE 156
C + P + V+ A +H+E F C +C F G R+Y + CE Y E
Sbjct: 84 CGR--PVEDRVVHALGKAWHVEHFVCAKCEKPF-YGHRYYERKGLAYCETHYNE 134
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
C C + + +R ++ AL + WH + C C+ GH Y R L C+ Y L+G
Sbjct: 81 CFCCGRPVEDR-VVHALGKAWHVEHFVCAKCEKPF--YGHRYYERKGLAYCETHYNELYG 137
Query: 96 NTGYCAACNKVI 107
+ C CNK I
Sbjct: 138 D--ICFECNKAI 147
>SB_9083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 31 PQPQICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDY 90
P CAGC + I L AL++ WH C C C C L + + C++DY
Sbjct: 84 PYLHTCAGCGEAIKGSQALLALEKQWHLWCFSCTKCHCLLSLEYMGMDGKP---YCEKDY 140
Query: 91 LRLFGNTGYCAACNKVI 107
LFG T CAACN I
Sbjct: 141 QELFGVT--CAACNGYI 155
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 100 CAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYL-CENKILCEYDYEE 156
CA C + I + ++ A +HL CF+C +C+ C+ Y+ + K CE DY+E
Sbjct: 89 CAGCGEAIKGSQALL-ALEKQWHLWCFSCTKCH---CLLSLEYMGMDGKPYCEKDYQE 142
Score = 34.7 bits (76), Expect = 0.063
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 86 CKRDYLRLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCE 145
CK DY +G C +C + E++ N +H CFAC C F D+
Sbjct: 7 CKDDYQNQYGKK--CDSCQLYLEG-EIISIHGKN-FHEACFACNSCRQPFPPSDKIIFTG 62
Query: 146 NKILCE 151
LC+
Sbjct: 63 TDYLCQ 68
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 34 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRL 93
++C C++VI + A +H +C C CD L T N+ C+ Y
Sbjct: 235 KVCVKCNQVIKTSSVQHA-GSTYHSECFTCHHCDKPLAGSPFTKQEGRNV--CQNCYRER 291
Query: 94 FGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILC 150
+ C AC+ +I + +H ECF C +CN + G++F + + + +C
Sbjct: 292 YAKR--CGACHNLIEGNTKFVAYDEKYFHRECFTCCKCN-KPLAGEKFRIRDGEKIC 345
Score = 35.1 bits (77), Expect = 0.048
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 56 WHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVMR 115
W E LK C C G TL + ++C R + CAACN E +
Sbjct: 137 WGEK-LKPRCAGCEEMNEGFTL--KDEKLICHG--CRGINPSKVCAACNGDFAPGEKKVG 191
Query: 116 ARSNVYHLECFACQQC-----NHRFCVGDRFYLCEN 146
+S +H +CF C +C + +F D LC N
Sbjct: 192 YQSKTFHDKCFICDECKQPIGSKQFIRRDERRLCNN 227
>SB_30367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 48.8 bits (111), Expect = 4e-06
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 6/123 (4%)
Query: 35 ICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLF 94
IC C K IT +++ ++ H +C C CR G T R + +CK D R+
Sbjct: 1 ICNSCFKTITSS-VVRYQNKPHHSECFVC--FHCRTPLAGKTFQMRDDRKVCK-DCNRIH 56
Query: 95 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDY 154
C AC + I + YH +CF C +C + G F E +C+ Y
Sbjct: 57 -YAKRCVACRQYIEGTVKFVTRDEGTYHSDCFVCSRC-RKPLAGKTFTEHEGSWVCDDCY 114
Query: 155 EER 157
+R
Sbjct: 115 HDR 117
Score = 37.1 bits (82), Expect = 0.012
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 36 CAGCSKVITERYLLKALDQ-LWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLF 94
C C + I D+ +H DC C CR G T +C Y +
Sbjct: 61 CVACRQYIEGTVKFVTRDEGTYHSDCFVCS--RCRKPLAGKTFTEHEGSWVCDDCYHDRY 118
Query: 95 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQ 129
C C++ + A ++ +YH ECF CQ
Sbjct: 119 AKR--CNMCHQSLEANVEFVKYDEKLYHNECFVCQ 151
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 48.8 bits (111), Expect = 4e-06
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
CA C ++I +A D WH C CDC LG + + + R N C + L+
Sbjct: 143 CAACDEIIFAEQCTEAEDSCWHVQHFCCFECDCPLGGMRYVM--RDNKPYCCHCFESLYA 200
Query: 96 NTGYCAACNKVIPAFEMVMRARSNVYHL--ECFACQQCNHRFCVGDRFYLCENKILCEYD 153
+C +C + I M +H ECF+C C + +G F +I C D
Sbjct: 201 E--FCDSCGEPIEPDASQMAHNGQHWHATNECFSCCTCG-KALLGLPFLPKSGEIYCSPD 257
>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 45.6 bits (103), Expect = 3e-05
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
CA C + + E +L + WH+ C C C L ++ R C Y + +
Sbjct: 463 CASCGEPLLEGGVLYN-GETWHKACFSCYFCHRSLASAAFSV--RDGCRYCMECYGKFYA 519
Query: 96 NTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILC 150
C C K I E SN +H ECF C +C R + F +++LC
Sbjct: 520 KQ--CEICLKAIVGGEYYTLEESN-FHKECFMCSRCG-RSLASEGFVREGDELLC 570
Score = 44.4 bits (100), Expect = 8e-05
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 36 CAGCSKVI--TERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRL 93
C C + I R + D+ WH+ C C C L G + R + ILC Y+
Sbjct: 339 CEACHQKIGPESRDISSDDDRHWHDKCFICDICRRPLKSDGKFTFYR-DQILCNNCYVAN 397
Query: 94 FGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQC 131
+ C AC ++I + + N +H CF C C
Sbjct: 398 YQKE--CFACGQMIDSGASRLEYSGNFWHENCFRCANC 433
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 36 CAGCSKVITE-RYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLF 94
C C ++I L+ WHE+C +C C +G G + + C Y F
Sbjct: 402 CFACGQMIDSGASRLEYSGNFWHENCFRCANCGEAIGTSG--FVPKDDTFFCPGCYQSKF 459
Query: 95 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHR 134
CA+C + P E + +H CF+C C HR
Sbjct: 460 SKR--CASCGE--PLLEGGVLYNGETWHKACFSCYFC-HR 494
Score = 38.7 bits (86), Expect = 0.004
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
C + T Y + A+++ WH +C CD + G R + +C + +
Sbjct: 280 CLKALLIFTGEYTV-AMNKNWHLGHFQCQTCDHSI--TGRQFIVRGDKPVCTDCFKDSYA 336
Query: 96 NTGYCAACN-KVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDY 154
+ C AC+ K+ P + +H +CF C C +F ++ILC Y
Sbjct: 337 HE--CEACHQKIGPESRDISSDDDRHWHDKCFICDICRRPLKSDGKFTFYRDQILCNNCY 394
>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
Length = 163
Score = 45.6 bits (103), Expect = 3e-05
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
CA C + + E +L + WH+ C C C L ++ R C Y + +
Sbjct: 51 CASCGEPLLEGGVLYN-GETWHKACFSCYFCHRSLASAAFSV--RDGCRYCMECYGKFYA 107
Query: 96 NTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILC 150
C C K I E SN +H ECF C +C R + F +++LC
Sbjct: 108 KQ--CEICLKAIVGGEYYTLEESN-FHKECFMCSRCG-RSLASEGFVREGDELLC 158
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 56 WHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVMR 115
WHE+C +C C +G G + + C Y F CA+C + P E +
Sbjct: 11 WHENCFRCANCGEAIGTSG--FVPKDDTFFCPGCYQSKFSKR--CASCGE--PLLEGGVL 64
Query: 116 ARSNVYHLECFACQQCNHR 134
+H CF+C C HR
Sbjct: 65 YNGETWHKACFSCYFC-HR 82
>SB_57744| Best HMM Match : LIM (HMM E-Value=4.3e-15)
Length = 85
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
C CSK + + A+ + WH+ CL C CC+ L L + I CK Y + FG
Sbjct: 10 CPRCSKTVYKAEERLAIGKKWHKSCLTCKCCNKSLDST--NLADKDGEIYCKGCYGKNFG 67
Query: 96 NTGY 99
GY
Sbjct: 68 PKGY 71
>SB_40829| Best HMM Match : LIM (HMM E-Value=1.7e-14)
Length = 82
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 30 PPQPQICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRD 89
P CA C + + A+ + +H C +C C+ RL Y R + + CK+D
Sbjct: 5 PSSINYCATCGEPCIKTEYKYAIGKRFHNACFRCVVCEERLST---DFYARGSELYCKKD 61
Query: 90 YLRLFGNTGYCAACN 104
YL F + + A N
Sbjct: 62 YLSKFNSVCHICAHN 76
>SB_48571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 79 TRANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVG 138
T N +L + L L N +C CN +I E + + F C+QC + CV
Sbjct: 146 TPENYVLTNKQTLNLIANNAHCEHCNALINRKEAAVVGETRGKVSITFKCKQCGGQTCVS 205
Query: 139 D 139
D
Sbjct: 206 D 206
>SB_29029| Best HMM Match : C1_1 (HMM E-Value=1)
Length = 250
Score = 35.1 bits (77), Expect = 0.048
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 79 TRANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVG 138
T N +L + L L N +C CN +I E + + F C+QC + C
Sbjct: 141 TPENYVLTNKQTLNLIANNAHCEHCNALINREEAAVVGETRGKVSITFKCKQCGGQTCFS 200
Query: 139 D 139
D
Sbjct: 201 D 201
>SB_5263| Best HMM Match : C1_1 (HMM E-Value=1)
Length = 407
Score = 35.1 bits (77), Expect = 0.048
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 79 TRANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVG 138
T N +L + L L N +C CN +I E + + F C+QC + C
Sbjct: 253 TPENYVLTNKQTLNLIANNAHCEHCNALINREEAAVVGETRGKVSITFKCKQCGGQTCFS 312
Query: 139 D 139
D
Sbjct: 313 D 313
>SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34)
Length = 621
Score = 34.7 bits (76), Expect = 0.063
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
CA C ++I +A D+ WH+ C CD LG G R C Y + +
Sbjct: 374 CAACDELIFSETYTQAEDRNWHQRHFCCLECDRDLG--GQLYVARGGQPHCLECYDKYYA 431
Query: 96 NTGYCAACNKVIPA 109
+C +C K I A
Sbjct: 432 K--HCMSCKKNIAA 443
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 34.3 bits (75), Expect = 0.083
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 36 CAGCSKVITERYLL--KALDQLWHEDCLKCGCCDCRLG 71
CA CS+ I + + L + WH+DC C C R G
Sbjct: 2031 CASCSQPIRKSMAVYVSELKRYWHDDCFSCVVCHVRFG 2068
>SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1386
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 79 TRANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVG 138
T N +L + L L N +C CN +I E + + C+QC + CV
Sbjct: 147 TPENNVLTNKQALNLIANNAHCEHCNALINREEAAVVEETRGKVSITLKCKQCGGQTCVS 206
Query: 139 D 139
D
Sbjct: 207 D 207
>SB_13721| Best HMM Match : C1_1 (HMM E-Value=1.1)
Length = 256
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 79 TRANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVG 138
T N +L + L L N +C CN +I E + + C+QC + CV
Sbjct: 147 TPENNVLTNKQALNLIANNAHCEHCNALINREEAAVVEETRGKVSITLKCKQCGGQTCVS 206
Query: 139 D 139
D
Sbjct: 207 D 207
>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 935
Score = 33.1 bits (72), Expect = 0.19
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 30 PP--QPQICAGCSKVITERYLLKALDQLWHED--CLKCGCCDCRLGEVGHTLYTRANLIL 85
PP QPQ C C KV +LK Q HE KC C+ + GH L+ + +
Sbjct: 254 PPAEQPQTCDICKKVYASARVLKVHVQTVHEGERPHKCKYCEATFTQRGH-LWRHKHTVH 312
Query: 86 --CKRDYLRLFGNTGYCA--ACNKVIP-AFEMVMRARSNVYHLECFACQQCNHRF 135
C+ ++ C+ C P ++ + S FAC+QC F
Sbjct: 313 PDCEEVQQKIMSGEHVCSVEGCGLRFPCGSDLTVHMSSKHNTTWPFACEQCGVTF 367
>SB_57743| Best HMM Match : LIM (HMM E-Value=1.7e-08)
Length = 197
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 33 PQICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHT 76
P C C K + KA + WH+ CL C C+ RL T
Sbjct: 2 PDKCPRCEKPVYFAEQAKANGKSWHKPCLTCKHCNKRLDSTNLT 45
>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 100 CAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILC 150
C C + + E ++ R ++H CF C +CN G + E++ C
Sbjct: 611 CLICGERVYLMERLVAER-RLFHRACFRCSRCNSSLRAGTYTFFPESESFC 660
>SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28)
Length = 693
Score = 31.9 bits (69), Expect = 0.44
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 169 PLAHLKRQTTHLPPPPVNITFVF 191
P H+K QTTH P P N+T ++
Sbjct: 491 PRVHIKSQTTHQSPTPTNVTVLY 513
>SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 100 CAACNKVIPAFEMVMRARSNVYHLECFACQQCN 132
C +C K + E V ++V+H CF C CN
Sbjct: 245 CDSCGKSVDILERVA-VENHVFHKACFVCAICN 276
>SB_3515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1295
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 54 QLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFGNTGYCAACN 104
Q H +C C+ RL Y R + + CK+DYL F + + A N
Sbjct: 731 QKHHHTLNQCVVCEERLST---DFYARGSELYCKKDYLSKFNSVCHICAHN 778
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 28.7 bits (61), Expect = 4.1
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 33 PQICAGCSKVITERYLLKALDQLWHEDCLKCGCCDC-RLGEVGHTLYTRANLILCKRDYL 91
P+IC C+K LK Q+ H + K C +C RL H L + + ++ Y+
Sbjct: 775 PRICEECNKAFKYPSDLKKHLQI-HTNIKKFKCEECGRLFRRLHQLNVHSRIHTGEKPYV 833
Query: 92 RLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRF 135
C + M +R R + HL F C +C + F
Sbjct: 834 -----CNRCGVSFRHDSTLTMHIRTRHD--HLRPFKCDECGNTF 870
>SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)
Length = 446
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 100 CAACNKVIPAFEMVMRARSNVYHLECFACQQCNHR 134
C C K A E V+ A N +H CF C +C+ +
Sbjct: 218 CPRCEKRAYAAEQVLGAGFN-WHKSCFNCYKCHKK 251
Score = 27.9 bits (59), Expect = 7.2
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
Query: 96 NTGYCAAC-NKVIPAFEMVMRARSNVYHLECFACQQCNHRF---CVGDRFYLCENKILCE 151
N C C + V A E+ M ++ +H +CF+C+ C + C I+ +
Sbjct: 40 NMPKCPRCGDNVYHAEEVSME--NHKFHKKCFSCKDCRKKLDSTNAASHDGKCHTTIVTQ 97
Query: 152 YDYEERLVFANMA--YNPPPLAHLKRQTTHLPPPP-VNITFVFNVIFYTN 198
R F + + P A L + PP P + I VF+ FY N
Sbjct: 98 RRL-SRCPFTEVGIFHRNPISAPLNTRKIEKPPRPLIRIITVFSSNFYDN 146
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 33 PQICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCR 69
P C C K+ + + WH+ C C CR
Sbjct: 294 PMRCGRCDKMCYHAEGISMAGKRWHKSCFACAEVRCR 330
>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 928
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 9/109 (8%)
Query: 32 QPQICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYL 91
+P +C C+K L D+++H C C G R+ L+ +R +
Sbjct: 589 KPYVCTKCNKAFAYSASLVKHDRVYHRGVKPYECDIC-----GRAFSDRSGLVKHERTHT 643
Query: 92 RLFGNTGY-CAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGD 139
G + C+ C+ + ++ R + + C+ C+ F V D
Sbjct: 644 ---GERPFECSFCHMMFSLKGLLTRHMRSHTGQRPYKCEYCSAAFSVSD 689
>SB_57460| Best HMM Match : Folate_rec (HMM E-Value=0.03)
Length = 190
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 117 RSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEE 156
R+++ +L C+ C R+ R ++CE+ LC+ YE+
Sbjct: 83 RNHMNYLMCYFCSPEQERWYKNSRLHVCES--LCDAVYEK 120
>SB_29198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 160 FANMAYNPPPLAHLKRQTTHLPPPPVNI 187
F M P P+AH +RQ L P+N+
Sbjct: 48 FRTMCRRPIPMAHAERQVNELVRAPLNV 75
>SB_28915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 81 ANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVMRARSNV 120
A LI +D L N +C +CN+ +P+ E + + S+V
Sbjct: 165 ARLIKVPQDPTVLRKNIYFCPSCNRYLPSTEFKLSSNSSV 204
>SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)
Length = 910
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 97 TGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEE 156
T C C+K ++R + ++ F C++C F D E K Y+ EE
Sbjct: 2 TFVCDTCSKEFTQETNLVRHKKAIHGNRAFVCERCQKSFNRKDILKRHEKK---TYELEE 58
Query: 157 RLVFANM 163
++ AN+
Sbjct: 59 QVSDANL 65
>SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.5 bits (58), Expect = 9.6
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 36 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFG 95
C C+ + + + LK+ + H+D K CD E + +L+ KR +
Sbjct: 607 CDQCNLLFSWQCSLKSHIREVHKDVEKRSKCD----ECQKCFHRHRDLLTHKRTVHKK-E 661
Query: 96 NTGYCAACNKVIPAFEMVMRARSNVYHLECFACQQCNHRF 135
C C K+ + R V+ + F C++C +F
Sbjct: 662 KPYKCDVCKKIFGLSSSLSRHIRTVHQDKAFKCERCEKKF 701
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.328 0.141 0.473
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,247,842
Number of Sequences: 59808
Number of extensions: 361423
Number of successful extensions: 1801
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1730
Number of HSP's gapped (non-prelim): 58
length of query: 226
length of database: 16,821,457
effective HSP length: 80
effective length of query: 146
effective length of database: 12,036,817
effective search space: 1757375282
effective search space used: 1757375282
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 58 (27.5 bits)
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