GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001157-TA|BGIBMGA001157-PA|IPR001781|LIM, zinc-binding
         (226 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY745233-1|AAU93512.1|  100|Anopheles gambiae SOD3B protein.           25   1.4  
AY745220-1|AAU93487.1|  101|Anopheles gambiae cytochrome P450 pr...    25   2.4  
AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    25   2.4  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    25   2.4  
AY176048-1|AAO19579.1|  521|Anopheles gambiae cytochrome P450 CY...    23   7.4  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   9.8  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    23   9.8  

>AY745233-1|AAU93512.1|  100|Anopheles gambiae SOD3B protein.
          Length = 100

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 87  KRDYLRLFGNTGYCAAC 103
           K DY +  GN+G C AC
Sbjct: 67  KHDYSKTTGNSGNCIAC 83


>AY745220-1|AAU93487.1|  101|Anopheles gambiae cytochrome P450
           protein.
          Length = 101

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 9/43 (20%)

Query: 134 RFCVGDRFYLCENKIL---------CEYDYEERLVFANMAYNP 167
           R C+G RF  CE +IL          EY+YE+     N  Y P
Sbjct: 56  RTCIGRRFAECELQILLSKLFRRYQVEYNYEKLTYKVNPTYIP 98


>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 167 PPPLAHLKRQTTHLPPPPVN 186
           PPP A+ ++Q   +PPP  N
Sbjct: 629 PPPSAYQQQQPPVVPPPRTN 648


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 57  HEDCLKCGCCDCRLGEVGHTLYTRANLILC 86
           H  C+ CG C+CR G  G     RA+   C
Sbjct: 608 HGRCV-CGQCECREGWTGPACDCRASNETC 636


>AY176048-1|AAO19579.1|  521|Anopheles gambiae cytochrome P450
           CYP12F4 protein.
          Length = 521

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 108 PAFEMVMRARSNVYHL 123
           PAF  +MRA   +YHL
Sbjct: 261 PAFYRLMRALDELYHL 276


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 75  HTLYTRANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVM 114
           H LY    +      YL L  +    AAC+ V PA  +++
Sbjct: 200 HELYQLNGVHNHSNHYLDLVLSNSAAAACSSVYPASSLLL 239


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 37  AGCSKVITERYLLKALDQ 54
           AGC+ V  E YL++ +D+
Sbjct: 120 AGCTDVTGEEYLVEPVDE 137


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.328    0.141    0.473 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,753
Number of Sequences: 2123
Number of extensions: 11404
Number of successful extensions: 32
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 9
length of query: 226
length of database: 516,269
effective HSP length: 62
effective length of query: 164
effective length of database: 384,643
effective search space: 63081452
effective search space used: 63081452
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 46 (22.6 bits)