GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001156-TA|BGIBMGA001156-PA|IPR010097|Malate
dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria,
IPR001236|Lactate/malate dehydrogenase
         (344 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     25   0.61 
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         24   1.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   3.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   3.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.9  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 58  DDDDRIKGTE---LELSNLPGGPSVSAFIGDTNLEQAIHSSN 96
           DDDD+ +  +   L L   PGG S  A +  + L  A+ S+N
Sbjct: 238 DDDDKDQDMDEGDLPLPAAPGGDSQQAALNYSTLASAVASAN 279


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 175 DTSRSRSFVAKALKINAQEIQVPVIGGHSDKTIIPLFSNLTPRNY 219
           D    R    +AL+  ++E+++P    ++ KT   L S   PR Y
Sbjct: 159 DNLSERMKTTRALEKTSEELKIPKAKINTGKTQYNLNSKSLPRQY 203


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 319 NRCIPILSREVLEGEKYVEFMEN 341
           NR IP  S +V EG+K V  +EN
Sbjct: 168 NRMIPGPSIQVCEGDKVVIDVEN 190


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 319 NRCIPILSREVLEGEKYVEFMEN 341
           NR IP  S +V EG+K V  +EN
Sbjct: 168 NRMIPGPSIQVCEGDKVVIDVEN 190


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 143 TNPINYLIPFASTVMYKYGCYNPSKMFG 170
           +NP  +L       +  Y CY P K  G
Sbjct: 422 SNPCKHLDAICQDKLGDYACYCPPKHTG 449


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.135    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,720
Number of Sequences: 317
Number of extensions: 3064
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 344
length of database: 114,650
effective HSP length: 57
effective length of query: 287
effective length of database: 96,581
effective search space: 27718747
effective search space used: 27718747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)