Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001156-TA|BGIBMGA001156-PA|IPR010097|Malate
dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria,
IPR001236|Lactate/malate dehydrogenase
(344 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0127 - 31872840-31872912,31873021-31873115,31873199-318732... 197 9e-51
08_02_0774 - 21047696-21048889 192 5e-49
01_06_1220 + 35493575-35494765 191 6e-49
01_06_0072 + 26184592-26184828,26184934-26185107,26185591-261857... 189 2e-48
05_07_0204 - 28397597-28397737,28398225-28398342,28399215-283993... 188 6e-48
07_03_1371 - 26100553-26101767 178 6e-45
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311... 174 1e-43
02_01_0042 + 295608-296222,298479-298925 81 2e-15
06_01_0033 - 346273-347355 77 3e-14
10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012... 50 2e-06
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352... 36 0.036
09_04_0751 + 19927164-19927835,19927926-19928663 31 1.3
06_03_1298 + 29141578-29141623,29142129-29142250,29143818-291438... 30 3.1
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819... 29 4.1
03_06_0284 + 32836171-32836377,32836466-32836568,32836681-328367... 29 5.4
01_06_1436 - 37353741-37354525,37356508-37356619 29 5.4
12_02_1012 - 25281820-25281987,25282337-25282409,25283370-252834... 29 7.2
02_01_0656 - 4870315-4870975,4872018-4872245,4872874-4872987,487... 29 7.2
>03_06_0127 -
31872840-31872912,31873021-31873115,31873199-31873288,
31873364-31873399,31874039-31874122,31874223-31874312,
31874426-31874740,31875674-31875883,31875965-31876036
Length = 354
Score = 197 bits (481), Expect = 9e-51
Identities = 112/315 (35%), Positives = 183/315 (58%), Gaps = 8/315 (2%)
Query: 27 QVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNLPGGPSVSAFIGDT 86
+V+V+GAA IG +SL +K N VS LHLYD + G ++S++ V F+G
Sbjct: 44 KVAVLGAAGGIGQPLSLLMKLNPLVSVLHLYDVVNT-PGVTADVSHMDTTAVVRGFLGPN 102
Query: 87 NLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNPI 146
LE A+ +LV++ + +PRKPG TR+ + NA +++ LC+ +A A V + +NP+
Sbjct: 103 QLEAALTGMDLVIIPAGLPRKPGMTRDDLFNKNAGIVRSLCEGVAKCCPNAIVNLISNPV 162
Query: 147 NYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINAQEIQVPVIGGHSDKT 206
N +P A+ V K G Y+P ++ G+T +D +R+ +FVA+ L I+ +++ VPV+GGH+ T
Sbjct: 163 NSTVPIAAEVFKKAGTYDPKRLLGVTTLDVARANTFVAEVLGIDPKDVNVPVVGGHAGVT 222
Query: 207 IIPLFSNLTPRNYRIEPCQADMLTRLVRKAGTEVVMHKHGAESSTLAMAWSINEFIDIIL 266
I+PL S + P P + LT+ ++ GTEVV K GA S+TL+MA++ +F D L
Sbjct: 223 ILPLLSQVHP-PCSFTPDEISYLTKRIQNGGTEVVEAKAGAGSATLSMAFAAAKFGDACL 281
Query: 267 DAILGYRVVVNC-YTANSNFGTKFFAGPTSVGPHGIIQACCHFPMSEFESYLLNRCIPIL 325
A+ G VV C Y A++ FFA +G G + P+++FE + +
Sbjct: 282 RAMRGDAGVVECSYVASAVTELPFFATKVRLGRAGAEEVLPLGPLNDFE----RAGLEMA 337
Query: 326 SREVLEG-EKYVEFM 339
+E++E +K ++FM
Sbjct: 338 KKELMESIQKGIDFM 352
>08_02_0774 - 21047696-21048889
Length = 397
Score = 192 bits (467), Expect = 5e-49
Identities = 110/325 (33%), Positives = 182/325 (56%), Gaps = 5/325 (1%)
Query: 15 KKNTLILQKRNVQVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNLP 74
K + I + + +V+V+GAA IG + L +K + VS+LHLYD + +KG +LS+
Sbjct: 65 KSGSQISPEASYKVAVLGAAGGIGQPLGLLIKMSPLVSELHLYDIAN-VKGVAADLSHCN 123
Query: 75 GGPSVSAFIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQN 134
V F G + L + ++VV+ + +PRKPG TR+ + NA +++ L +A+A
Sbjct: 124 TPSQVLDFTGPSELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKSLVEAVADNC 183
Query: 135 QEAFVAISTNPINYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINAQEI 194
EAF+ I +NP+N +P A+ V+ + G YNP K+FG+T +D R+ +FVA+ + ++
Sbjct: 184 PEAFIHIISNPVNSTVPIAAEVLKQKGVYNPKKLFGVTTLDVVRANTFVAQKKNLKLIDV 243
Query: 195 QVPVIGGHSDKTIIPLFSNLTPRNYRIEPCQADMLTRLVRKAGTEVVMHKHGAESSTLAM 254
VPV+GGH+ TI+PL S P + + + LT+ ++ AGTEVV K GA S+TL+M
Sbjct: 244 DVPVVGGHAGITILPLLSKTMP-SVTFTDEETEQLTKRIQNAGTEVVEAKAGAGSATLSM 302
Query: 255 AWSINEFIDIILDAILGYRVVVNCYTANSNF-GTKFFAGPTSVGPHGI--IQACCHFPMS 311
A++ F++ L A+ G V C S FFA +G +G+ I + ++
Sbjct: 303 AYAAARFVESSLRALAGDPDVYECTFVQSELTELPFFASRVKLGKNGVESIISADLEGVT 362
Query: 312 EFESYLLNRCIPILSREVLEGEKYV 336
E+E+ L L + +G ++V
Sbjct: 363 EYEAKALEALKSELKASIEKGIEFV 387
>01_06_1220 + 35493575-35494765
Length = 396
Score = 191 bits (466), Expect = 6e-49
Identities = 110/320 (34%), Positives = 180/320 (56%), Gaps = 5/320 (1%)
Query: 20 ILQKRNVQVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNLPGGPSV 79
I + + +V+V+GAA IG + L +K + VS LHLYD + +KG +LS+ V
Sbjct: 70 ISPEASYKVAVLGAAGGIGQPLGLLIKMSPLVSALHLYDIAN-VKGVAADLSHCNTPSQV 128
Query: 80 SAFIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFV 139
F G + L + ++VV+ + +PRKPG TR+ + NA +++ L +A+A EAF+
Sbjct: 129 LDFTGPSELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKTLVEAVADNCPEAFI 188
Query: 140 AISTNPINYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINAQEIQVPVI 199
I +NP+N +P A+ V+ + G YNP K+FG+T +D R+ +F+A+ + ++ VPV+
Sbjct: 189 HIISNPVNSTVPIAAEVLKQKGVYNPKKLFGVTTLDVVRANTFIAQKKNLKLIDVDVPVV 248
Query: 200 GGHSDKTIIPLFSNLTPRNYRIEPCQADMLTRLVRKAGTEVVMHKHGAESSTLAMAWSIN 259
GGH+ TI+PL S P + + + LTR ++ AGTEVV K GA S+TL+MA++
Sbjct: 249 GGHAGITILPLLSKTRP-SVTFTNEETEELTRRIQNAGTEVVEAKAGAGSATLSMAYAAA 307
Query: 260 EFIDIILDAILGYRVVVNCYTANSNF-GTKFFAGPTSVGPHGI--IQACCHFPMSEFESY 316
F++ L A+ G V C S FFA +G +G+ I + ++E+E+
Sbjct: 308 RFVESSLRALAGDPDVYECTFVQSELTELLFFASRVKLGKNGVESIISSDLEGVTEYEAK 367
Query: 317 LLNRCIPILSREVLEGEKYV 336
L P L + +G ++V
Sbjct: 368 ALESLKPELKASIEKGIEFV 387
>01_06_0072 +
26184592-26184828,26184934-26185107,26185591-26185759,
26185863-26185924,26186506-26186630,26186735-26186852,
26187760-26187897
Length = 340
Score = 189 bits (461), Expect = 2e-48
Identities = 105/310 (33%), Positives = 168/310 (54%), Gaps = 2/310 (0%)
Query: 27 QVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNLPGGPSVSAFIGDT 86
+V+++GAA IG +SL +K N VS L LYD G ++S++ V F+GD
Sbjct: 29 KVAILGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGT-PGVAADVSHINAPAQVKGFMGDD 87
Query: 87 NLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNPI 146
L +A+ S++V++ + +PRKPG TR+ + NA +++ LC AIA A V + +NP+
Sbjct: 88 QLGEALEGSDIVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPNALVNMISNPV 147
Query: 147 NYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINAQEIQVPVIGGHSDKT 206
N +P A+ V K G Y+ K+FG+T +D R+++F A + ++ VPV+GGH+ T
Sbjct: 148 NSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVTDVNVPVVGGHAGIT 207
Query: 207 IIPLFSNLTPRNYRIEPCQADMLTRLVRKAGTEVVMHKHGAESSTLAMAWSINEFIDIIL 266
I+PLFS TP + LT+ + GTEVV K G S+TL+MA++ F + L
Sbjct: 208 ILPLFSQATPATNALSDEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFANACL 267
Query: 267 DAILGYRVVVNC-YTANSNFGTKFFAGPTSVGPHGIIQACCHFPMSEFESYLLNRCIPIL 325
+ G VV C + ++ FFA +G +G+ + +S+FE L L
Sbjct: 268 KGLNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVEEVLGLGQLSDFEKEGLENLKGEL 327
Query: 326 SREVLEGEKY 335
+ +G K+
Sbjct: 328 KASIEKGIKF 337
>05_07_0204 -
28397597-28397737,28398225-28398342,28399215-28399339,
28399683-28399744,28399867-28400035,28400594-28400767,
28400856-28401089
Length = 340
Score = 188 bits (458), Expect = 6e-48
Identities = 105/310 (33%), Positives = 169/310 (54%), Gaps = 2/310 (0%)
Query: 27 QVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNLPGGPSVSAFIGDT 86
+V+++GAA IG ++L +K N VS L LYD G ++S++ V F+G+
Sbjct: 28 KVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIAGT-PGVAADVSHINSPALVKGFVGEE 86
Query: 87 NLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNPI 146
L +A+ S++V++ + +PRKPG TR+ + NA +++ LC AI+ A V + +NP+
Sbjct: 87 QLGEALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCTAISKYCPNALVNMISNPV 146
Query: 147 NYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINAQEIQVPVIGGHSDKT 206
N +P A+ V K G Y+ K+FG+T +D R+++F A + E+ VPV+GGH+ T
Sbjct: 147 NSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVTEVNVPVVGGHAGIT 206
Query: 207 IIPLFSNLTPRNYRIEPCQADMLTRLVRKAGTEVVMHKHGAESSTLAMAWSINEFIDIIL 266
I+PLFS TP + + LT+ + GTEVV K G S+TL+MA++ F D L
Sbjct: 207 ILPLFSQATPASNALSHEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL 266
Query: 267 DAILGYRVVVNC-YTANSNFGTKFFAGPTSVGPHGIIQACCHFPMSEFESYLLNRCIPIL 325
+ G VV C + ++ FFA +G +G+ + +SEFE L L
Sbjct: 267 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGQLSEFEKEGLENLKGEL 326
Query: 326 SREVLEGEKY 335
+ +G K+
Sbjct: 327 KSSIEKGIKF 336
>07_03_1371 - 26100553-26101767
Length = 404
Score = 178 bits (433), Expect = 6e-45
Identities = 105/329 (31%), Positives = 176/329 (53%), Gaps = 10/329 (3%)
Query: 17 NTLILQKRNVQVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNLPGG 76
N ++ Q +V+++GAA IG +SL +K + VS LHLYD + + G +L +
Sbjct: 69 NRVVAQAGGYKVAILGAAGGIGQPLSLLVKMSPLVSALHLYDIAN-VDGVTADLGHCNTP 127
Query: 77 PSVSAFIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQE 136
V+ F G L + ++VV+ + +PRKPG TR+ + G NA +++ L +A+A
Sbjct: 128 AKVAGFTGKEELAGCLAGVDVVVIPAGVPRKPGMTRDDLFGINAGIVRELVEAVADHAPA 187
Query: 137 AFVAISTNPINYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINAQEIQV 196
A V + +NP+N +P A+ V+ + G Y+P K+FG+T +D R+ +FVA+ + ++ V
Sbjct: 188 ALVHVISNPVNSTVPIAAEVLKRKGVYDPRKLFGVTTLDVVRANTFVAEMKGLPLADVDV 247
Query: 197 PVIGGHSDKTIIPLFSNLTPRNYRIEPCQADMLTRLVRKAGTEVV--MHKHGAESSTLAM 254
PV+GGH+ TI+PL S P+ + + + LTR ++ AGTEVV K G S+TL+M
Sbjct: 248 PVVGGHAAATILPLLSKARPKTAFTDE-EVEALTRRIQNAGTEVVEAKAKAGGGSATLSM 306
Query: 255 AWSINEFIDIILDAILGYRVVVNCYTANSNFGTK--FFAGPTSVGPHGIIQACCHFP--- 309
A++ F++ L + G V C + FFA +G G+ +
Sbjct: 307 AYAAARFLEASLRGLDGDADVYECSYVQCQAVPELPFFACRVKLGRDGVEEVAAAGAELR 366
Query: 310 -MSEFESYLLNRCIPILSREVLEGEKYVE 337
++EFE+ L P L + + +G Y +
Sbjct: 367 GLTEFEARALEALKPQLKKSIDKGVAYAQ 395
>12_02_1221 -
27130321-27130491,27130616-27130664,27131120-27131188,
27131845-27131939,27132032-27132121,27132885-27132968,
27133122-27133211,27133310-27133624,27134184-27134399,
27134736-27134774,27135337-27135408
Length = 429
Score = 174 bits (423), Expect = 1e-43
Identities = 101/312 (32%), Positives = 171/312 (54%), Gaps = 17/312 (5%)
Query: 27 QVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNLPGGPSVSAFIGDT 86
+V+++GA+ IG ++L +K N VS LHLYD + G ++S++ G V F+G
Sbjct: 59 KVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNT-PGVTADISHMNTGAVVRGFLGQP 117
Query: 87 NLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNPI 146
LE A+ +LV++ + +PRKPG TR+ + NA +++ LC+ IA A V + +NP+
Sbjct: 118 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPV 177
Query: 147 NYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINAQEIQVPVIGGHSDKT 206
N +P A+ V K G Y+P ++ G+T +D R+ +FVA+ L ++ +++ VPVIGGH+ T
Sbjct: 178 NSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVT 237
Query: 207 IIPLFSNLTPR-NYRIEPCQADMLTRLVRKAGTEVVMHKHGAESSTLAMAWSINEFIDII 265
I+PL S + P ++ E + LT ++ GTEVV A++ ++F D
Sbjct: 238 ILPLLSQVNPPCSFTSE--EISYLTTRIQNGGTEVV------------EAYAASKFADAC 283
Query: 266 LDAILGYRVVVNC-YTANSNFGTKFFAGPTSVGPHGIIQACCHFPMSEFESYLLNRCIPI 324
L + G +V C + A+ FFA +G GI + P++EFE L +
Sbjct: 284 LRGLRGDAGIVECSFVASQVTELPFFASKVRLGRCGIEEILSLGPLNEFERAGLEKAKKE 343
Query: 325 LSREVLEGEKYV 336
L+ + +G ++
Sbjct: 344 LAESIQKGVAFI 355
>02_01_0042 + 295608-296222,298479-298925
Length = 353
Score = 80.6 bits (190), Expect = 2e-15
Identities = 50/188 (26%), Positives = 102/188 (54%), Gaps = 8/188 (4%)
Query: 22 QKRNVQVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDD-DDRIKGTELELSNLPGGPSVS 80
++R ++SVIGA + +G ++ + ++ L D D+++G L+L +
Sbjct: 36 RRRLTKISVIGAGN-VGMAIAQTILTRDMADEIALVDAVPDKLRGEMLDLQHAAAFLPRV 94
Query: 81 AFIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVA 140
+ DT+L S+L ++ + + PG +R +L N L +++ A+A + EA +
Sbjct: 95 RLVSDTDLA-VTRGSDLAIVTAGARQIPGESRLNLLQRNVALFRKIVPALAEHSPEALLL 153
Query: 141 ISTNPINYLIPFASTVMYKYGCYNPSKMFGI-THIDTSRSRSFVAKALKINAQEIQVPVI 199
I +NP++ L + V +K + S++ G T++D+SR R +A+ L++NAQ++Q ++
Sbjct: 154 IVSNPVDVL----TYVAWKLSGFPASRVIGSGTNLDSSRFRFLLAEHLQVNAQDVQAYMV 209
Query: 200 GGHSDKTI 207
G H D ++
Sbjct: 210 GEHGDSSV 217
>06_01_0033 - 346273-347355
Length = 360
Score = 76.6 bits (180), Expect = 3e-14
Identities = 51/196 (26%), Positives = 108/196 (55%), Gaps = 9/196 (4%)
Query: 22 QKRNVQVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDD-DDRIKGTELELSNLPGGPSVS 80
++R +++SVIGA + +G ++ + ++ L D D+++G L+L +
Sbjct: 35 RRRLIKISVIGAGN-VGMAIAQTILTQDLADEIVLIDAVADKVRGEMLDLQHAAAFLPRV 93
Query: 81 AFIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVA 140
+ T + SS+LV++ + + PG TR +L N L +++ A A + E+ +
Sbjct: 94 NIVSGTEVSLT-RSSDLVIVTAGARQIPGETRLNLLQRNVSLFRKIVPAAAEASPESVLV 152
Query: 141 ISTNPINYLIPFASTVMYKYGCYNPSKMFGI-THIDTSRSRSFVAKALKINAQEIQVPVI 199
I +NP++ L + V +K + S++ G T++D+SR R +A+ L+++AQ++Q ++
Sbjct: 153 IVSNPVDVL----TYVAWKLSGFPASRVIGSGTNLDSSRFRFLLAEHLEVSAQDVQAYMV 208
Query: 200 GGHSDKTIIPLFSNLT 215
G H D + + L+S+++
Sbjct: 209 GEHGDSS-VALWSSIS 223
>10_08_0381 +
17398972-17399014,17400823-17400981,17401066-17401241,
17401565-17401842,17401938-17402073,17402183-17402294,
17402421-17402515
Length = 332
Score = 50.4 bits (115), Expect = 2e-06
Identities = 45/205 (21%), Positives = 91/205 (44%), Gaps = 15/205 (7%)
Query: 21 LQKRNVQVSVIGAASDIGSYVSLFLKRNSKVSK-----LHLYD---DDDRIKGTELELSN 72
+ K ++V V GAA IG + + R + LH+ D + + G ++EL +
Sbjct: 1 MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVD 60
Query: 73 LPGGPSVSAFIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAA 132
P + + T++ +A N+ VMV PRK G R+ ++ N + + A+ A
Sbjct: 61 A-AFPLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEA 119
Query: 133 Q-NQEAFVAISTNPINYLIPFASTVMYKYGCYNPSK-MFGITHIDTSRSRSFVAKALKIN 190
V + NP N + ++ ++ P K + +T +D +R+ +++ L +
Sbjct: 120 HAAPNCKVLVVANPAN----TNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVQ 175
Query: 191 AQEIQVPVIGGHSDKTIIPLFSNLT 215
+++ +I G+ T P ++ T
Sbjct: 176 VTDVKNAIIWGNHSSTQYPDVNHAT 200
>08_02_1600 +
28133818-28133900,28134240-28134345,28135169-28135255,
28135354-28135438,28135510-28135691,28135921-28135991,
28136078-28136168,28136250-28136324,28136436-28136537,
28136620-28136742,28136823-28136891,28136990-28137058,
28137158-28137211,28137315-28137368
Length = 416
Score = 36.3 bits (80), Expect = 0.036
Identities = 43/207 (20%), Positives = 81/207 (39%), Gaps = 15/207 (7%)
Query: 99 VMVSRMPRKPGNTREQMLGANAPLIQRLCKAI-AAQNQEAFVAISTNPINYLIPFASTVM 157
+++ PR PG R +L N + KA+ + ++ V + NP N + +
Sbjct: 154 LLIGAKPRGPGMERSALLDINGQIFAEQGKALNSVASRNVKVIVVGNPCN----TNALIC 209
Query: 158 YKYGCYNPSKMF-GITHIDTSRSRSFVAKALKINAQEIQVPVIGGHSDKTIIPLFSNLTP 216
K P+K F +T +D +R++ +A + ++ I G+ T +P F N
Sbjct: 210 LKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAKI 269
Query: 217 RNYRIEPCQADMLTRLVRKAGTEVVMHKHGAESSTLAMAWSINEFIDIILDAILGYRVVV 276
++ D T+ + T+ V + G L W + + + R +V
Sbjct: 270 NGRPVKEVIKD--TKWLEDEFTKTVQKRGG----VLIQKWGRSSAASTAVSIVDAIRSLV 323
Query: 277 NCYTANSNFGTKFFAGPTSVGPHGIIQ 303
N F T + T+ P+GI +
Sbjct: 324 NPTPEGDWFSTGVY---TTGNPYGIAE 347
>09_04_0751 + 19927164-19927835,19927926-19928663
Length = 469
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Query: 318 LNRCIPILSREVLEGEKYVEFMENVKG 344
L RC+ REV+EGE+ EFMEN G
Sbjct: 414 LERCV----REVMEGERSKEFMENANG 436
>06_03_1298 +
29141578-29141623,29142129-29142250,29143818-29143874,
29143983-29144138,29144220-29144304,29144575-29144665,
29144807-29144971,29145064-29145186,29145334-29145409,
29145513-29145642,29145951-29147824,29148339-29148529,
29148697-29148860,29149164-29149275,29149276-29149294
Length = 1136
Score = 29.9 bits (64), Expect = 3.1
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 82 FIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAI-AAQNQEAFVA 140
F GD+ + L++ + R R+P N +L +++ I L A AA N F
Sbjct: 177 FAGDSVIFVRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTI 236
Query: 141 I---STNPINYLIPFASTVMYKYG 161
+P ++IPFA YG
Sbjct: 237 FYNPRASPTEFVIPFAKYQKAVYG 260
>07_03_1339 +
25879246-25881154,25881502-25881696,25881777-25881928,
25882147-25882607,25883723-25883810,25884066-25884135,
25884288-25884361,25884456-25884524,25884647-25884724,
25884946-25885070,25885168-25885240,25885508-25885566,
25885650-25886027,25886134-25886236,25886332-25886544
Length = 1348
Score = 29.5 bits (63), Expect = 4.1
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 48 NSKVSKLHLYDDDDRIKGTELELSNLPGGPSVSAFIGDTNLEQAIHSSNLVVMVS 102
+SK + DD T+LE S+ G P VS IG LEQ SS+L V++S
Sbjct: 288 SSKKMTVDDISSDDTSTNTKLEESSAKGEPCVS--IGCEILEQETKSSHLDVILS 340
>03_06_0284 +
32836171-32836377,32836466-32836568,32836681-32836757,
32836846-32837037,32837144-32837263,32837350-32837412,
32837537-32837671,32837827-32837991,32838104-32838181,
32840303-32840389,32840548-32840619,32840925-32840951,
32842292-32842390,32843143-32843213,32843710-32843838,
32843936-32844012,32844186-32844226,32844319-32844393,
32844525-32844673,32844766-32844870,32844948-32845023,
32845465-32845541,32845761-32846529
Length = 997
Score = 29.1 bits (62), Expect = 5.4
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 67 ELELSNLPGGPSVSAFIGDTNLE-QAIHSSNLVVMVSR-MPRKPGNTREQMLGANAPLI 123
+L L++ PG SV + D+N+ + H + + R +P NTR + G +A LI
Sbjct: 180 QLRLNHTPGWQSVKVMLSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLI 238
>01_06_1436 - 37353741-37354525,37356508-37356619
Length = 298
Score = 29.1 bits (62), Expect = 5.4
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 21 LQKRNVQVSVIGAASDIGSYVSLFLKRNSKV---SKLHLYDDDDRIKGTELELSNL 73
LQ+ Q++ +G DI +Y++ K S V S+ HL ++ +G E +L L
Sbjct: 49 LQRSERQLNEVGIGDDIFNYITQLQKSESGVQPTSEAHLETHKEKHQGNESDLQKL 104
>12_02_1012 -
25281820-25281987,25282337-25282409,25283370-25283420,
25283523-25283932,25284083-25284413,25285340-25285439,
25287091-25287370
Length = 470
Score = 28.7 bits (61), Expect = 7.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 161 GCYNPSKMFGITHIDTSRSRSFVAKALKINAQEIQVPV 198
GC K+ +I RS+ F K K+NA+E++ P+
Sbjct: 119 GCAPLEKLRADHNIQDVRSKIFPLKRKKVNAEEVESPI 156
>02_01_0656 -
4870315-4870975,4872018-4872245,4872874-4872987,
4873813-4873901
Length = 363
Score = 28.7 bits (61), Expect = 7.2
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 73 LPGGPSVSAFIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAA 132
L GG +G ++ A + V ++S RK G + LGA+A L+ A+AA
Sbjct: 182 LRGGVLGLGGVGHMGVKVAKSMGHHVTVISSSARKRGEAMDD-LGADAYLVSSDAAAMAA 240
Query: 133 QNQEAFVAISTNPINY 148
I T P+++
Sbjct: 241 AGDSLDYIIDTVPVHH 256
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.135 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,230,169
Number of Sequences: 37544
Number of extensions: 362771
Number of successful extensions: 827
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 19
length of query: 344
length of database: 14,793,348
effective HSP length: 83
effective length of query: 261
effective length of database: 11,677,196
effective search space: 3047748156
effective search space used: 3047748156
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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