GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001156-TA|BGIBMGA001156-PA|IPR010097|Malate
dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria,
IPR001236|Lactate/malate dehydrogenase
         (344 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...   196   1e-50
Z49127-1|CAA88944.1|  333|Caenorhabditis elegans Hypothetical pr...    43   3e-04
U15420-1|AAA67063.1|  333|Caenorhabditis elegans lactate dehydro...    43   3e-04
L43563-1|AAC41613.1|  333|Caenorhabditis elegans L-lactate dehyd...    43   3e-04
AF125955-5|AAO12427.1|  273|Caenorhabditis elegans Hypothetical ...    38   0.014
AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical ...    38   0.014
Z72509-2|CAA96646.1|  520|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    30   2.1  

>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score =  196 bits (479), Expect = 1e-50
 Identities = 107/312 (34%), Positives = 185/312 (59%), Gaps = 3/312 (0%)

Query: 27  QVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNLPGGPSVSAFIGDT 86
           +V+++GAA  IG  + L LK++  V+ L LYD  +   G   +LS++     V+A  G  
Sbjct: 30  KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNT-PGVAADLSHIDSNAKVTAHTGPK 88

Query: 87  NLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNPI 146
            L  A+ +++++V+ + +PRKPG TR+ +   NA +++ L   IA  + +A +AI TNP+
Sbjct: 89  ELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAIITNPV 148

Query: 147 NYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINAQEIQVPVIGGHSDKT 206
           N  +P AS V+ K G Y+P ++FG+T +D  RS++FV++    +A +  VPV+GGH+  T
Sbjct: 149 NSTVPIASEVLKKAGVYDPKRVFGVTTLDVVRSQAFVSELKGHDASKTVVPVVGGHAGIT 208

Query: 207 IIPLFSNLTPRNYRIEPCQADMLTRLVRKAGTEVVMHKHGAESSTLAMAWSINEFIDIIL 266
           IIPL S + P + +    +   LT  ++ AGTEVV  K GA S+TL+MA +   F + ++
Sbjct: 209 IIPLLSQVKP-STKFSEEEISKLTPRIQDAGTEVVNAKAGAGSATLSMALAGARFANALV 267

Query: 267 DAILGYRVVVNCYTANSNF-GTKFFAGPTSVGPHGIIQACCHFPMSEFESYLLNRCIPIL 325
             I G + V   Y A+    G ++F+ P  +GP+G+ +      +S +E  L++  +P L
Sbjct: 268 RGIKGEKNVQCAYVASDAVKGVEYFSTPVELGPNGVEKILGVGKVSAYEQKLIDASVPEL 327

Query: 326 SREVLEGEKYVE 337
           ++ + +G  +V+
Sbjct: 328 NKNIAKGVAFVK 339


>Z49127-1|CAA88944.1|  333|Caenorhabditis elegans Hypothetical
           protein F13D12.2 protein.
          Length = 333

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 37/183 (20%), Positives = 84/183 (45%), Gaps = 8/183 (4%)

Query: 27  QVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDD-DDRIKGTELELSNLPGGPSVSAFIGD 85
           +V+V+G    +G   +  + + +  ++L L D   D++KG  ++L +            D
Sbjct: 22  KVTVVGVGQ-VGMACAYSILQQNLANELCLVDVVADKLKGEMMDLQHGLAFTRHCTVKAD 80

Query: 86  TNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNP 145
           T+       S L V+ +   ++ G TR  ++  N  + + +   +   + +  + + +NP
Sbjct: 81  TDYSITA-GSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQLVKYSPDTCILVVSNP 139

Query: 146 INYLIPFASTVMYKYGCYNPSKMFGI-THIDTSRSRSFVAKALKINAQEIQVPVIGGHSD 204
           ++ L    + V +K       ++FG  T++D++R R  +++ L I        +IG H D
Sbjct: 140 VDVL----TYVTWKLSGLPRERVFGSGTNLDSARFRFLLSEKLNIAPSSCHGWIIGEHGD 195

Query: 205 KTI 207
            ++
Sbjct: 196 SSV 198


>U15420-1|AAA67063.1|  333|Caenorhabditis elegans lactate
           dehydrogenase protein.
          Length = 333

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 37/183 (20%), Positives = 84/183 (45%), Gaps = 8/183 (4%)

Query: 27  QVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDD-DDRIKGTELELSNLPGGPSVSAFIGD 85
           +V+V+G    +G   +  + + +  ++L L D   D++KG  ++L +            D
Sbjct: 22  KVTVVGVGQ-VGMACAYSILQQNLANELCLVDVVADKLKGEMMDLQHGLAFTRHCTVKAD 80

Query: 86  TNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNP 145
           T+       S L V+ +   ++ G TR  ++  N  + + +   +   + +  + + +NP
Sbjct: 81  TDYSITA-GSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQLVKYSPDTCILVVSNP 139

Query: 146 INYLIPFASTVMYKYGCYNPSKMFGI-THIDTSRSRSFVAKALKINAQEIQVPVIGGHSD 204
           ++ L    + V +K       ++FG  T++D++R R  +++ L I        +IG H D
Sbjct: 140 VDVL----TYVTWKLSGLPRERVFGSGTNLDSARFRFLLSEKLNIAPSSCHGWIIGEHGD 195

Query: 205 KTI 207
            ++
Sbjct: 196 SSV 198


>L43563-1|AAC41613.1|  333|Caenorhabditis elegans L-lactate
           dehydrogenase protein.
          Length = 333

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 37/183 (20%), Positives = 84/183 (45%), Gaps = 8/183 (4%)

Query: 27  QVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDD-DDRIKGTELELSNLPGGPSVSAFIGD 85
           +V+V+G    +G   +  + + +  ++L L D   D++KG  ++L +            D
Sbjct: 22  KVTVVGVGQ-VGMACAYSILQQNLANELCLVDVVADKLKGEMMDLQHGLAFTRHCTVKAD 80

Query: 86  TNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNP 145
           T+       S L V+ +   ++ G TR  ++  N  + + +   +   + +  + + +NP
Sbjct: 81  TDYSITA-GSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQLVKYSPDTCILVVSNP 139

Query: 146 INYLIPFASTVMYKYGCYNPSKMFGI-THIDTSRSRSFVAKALKINAQEIQVPVIGGHSD 204
           ++ L    + V +K       ++FG  T++D++R R  +++ L I        +IG H D
Sbjct: 140 VDVL----TYVTWKLSGLPRERVFGSGTNLDSARFRFLLSEKLNIAPSSCHGWIIGEHGD 195

Query: 205 KTI 207
            ++
Sbjct: 196 SSV 198


>AF125955-5|AAO12427.1|  273|Caenorhabditis elegans Hypothetical
           protein F46E10.10b protein.
          Length = 273

 Score = 37.5 bits (83), Expect = 0.014
 Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 4/154 (2%)

Query: 63  IKGTELELSNLPGGPSVSAFIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPL 122
           ++G   EL +    P++ + +  T+ + A    +   +V  MPR+ G  R+ +L AN  +
Sbjct: 50  LEGVVFELQDC-ALPTLFSVVAVTDEKSAFTGIDYAFLVGAMPRREGMERKDLLAANVKI 108

Query: 123 IQRLCKAIAAQNQEAF-VAISTNPINYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRS 181
            +   KA+A   +    V +  NP N     A+   Y  G         +T +D +R+ +
Sbjct: 109 FKSQGKALAEYAKPTTKVIVVGNPANTNAFIAA--KYAAGKIPAKNFSAMTRLDHNRALA 166

Query: 182 FVAKALKINAQEIQVPVIGGHSDKTIIPLFSNLT 215
            +A         ++  +I G+   T  P  ++ T
Sbjct: 167 QLALKTGTTIGNVKNVIIWGNHSGTQFPDVTHAT 200


>AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical
           protein F46E10.10a protein.
          Length = 336

 Score = 37.5 bits (83), Expect = 0.014
 Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 4/154 (2%)

Query: 63  IKGTELELSNLPGGPSVSAFIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPL 122
           ++G   EL +    P++ + +  T+ + A    +   +V  MPR+ G  R+ +L AN  +
Sbjct: 50  LEGVVFELQDC-ALPTLFSVVAVTDEKSAFTGIDYAFLVGAMPRREGMERKDLLAANVKI 108

Query: 123 IQRLCKAIAAQNQEAF-VAISTNPINYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRS 181
            +   KA+A   +    V +  NP N     A+   Y  G         +T +D +R+ +
Sbjct: 109 FKSQGKALAEYAKPTTKVIVVGNPANTNAFIAA--KYAAGKIPAKNFSAMTRLDHNRALA 166

Query: 182 FVAKALKINAQEIQVPVIGGHSDKTIIPLFSNLT 215
            +A         ++  +I G+   T  P  ++ T
Sbjct: 167 QLALKTGTTIGNVKNVIIWGNHSGTQFPDVTHAT 200


>Z72509-2|CAA96646.1|  520|Caenorhabditis elegans Hypothetical
           protein F32G8.2 protein.
          Length = 520

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 238 TEVVMHKHGAESSTLAMAWSINEFIDIILDAILGYRVVVNCYTANSNFGTKFFAGPTSV 296
           T+ VM K+G + + +        F+D++L+  +   + V       NF T FF+GP  +
Sbjct: 202 TKTVMQKNGFKFAQMLNMKETKPFLDLLLELGISSEISVFQQAKKHNF-TTFFSGPQQI 259


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 5/39 (12%)

Query: 153  ASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINA 191
            A  V Y +GCY PS    +T IDT+ S S VA  + INA
Sbjct: 2031 AGRVNYIFGCYGPS----VT-IDTACSSSLVALEMAINA 2064


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.135    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,062,497
Number of Sequences: 27539
Number of extensions: 325949
Number of successful extensions: 691
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 10
length of query: 344
length of database: 12,573,161
effective HSP length: 82
effective length of query: 262
effective length of database: 10,314,963
effective search space: 2702520306
effective search space used: 2702520306
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)