Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001154-TA|BGIBMGA001154-PA|IPR010561|DIRP
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    31   0.43 
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    29   1.3  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    29   1.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   4.0  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    28   4.0  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    27   7.0  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   7.0  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    27   9.3  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 57  PPKPAPSEPVQKLNARGMPARIRKKNRFIFVDDFVNTSPPRQSPKKTPK 105
           PP P P+ P Q  N   +P   R  N    +   VN  PP  +P + P+
Sbjct: 239 PPPPPPTLPPQSTNTSQLPMPSRNVNN---LGSQVNIPPPPATPSQPPR 284


>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 98  QSPKKTPKI---LNKTPNKPPSAKKQKSPIKVQKATERN-DKVDSVGIQMQDNKSGHRIG 153
           +S KKTP+I    N  P   P+ K  K    +    +++  K  S  + M DN S HR G
Sbjct: 148 RSRKKTPEIAAPANIEPEVAPTTKTPKKRAALSNEEKQSLKKFQSAMLPMLDNISNHRFG 207


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 6/86 (6%)

Query: 53  GTKLPPKPAPSEPVQKLNARGMPARIRKKNRFIFVDDFVNTSPPRQSPKKTPKI-LNKTP 111
           GTK P    P+ P  +        ++  ++            PP+++P K+    L KTP
Sbjct: 140 GTKAPTTTKPAAPAAQSKTETPAPKVTSES----TKKETAAPPPQETPTKSADAELAKTP 195

Query: 112 NKPPSAKKQKSPIKVQKATERNDKVD 137
           + P +A K K+    + AT   D  D
Sbjct: 196 SAPAAALK-KAAEAAEPATVTEDATD 220


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 9/110 (8%)

Query: 86  FVDDFVNTSPPRQSPKKTPKILNKTPNKPPSAKKQKSPIKVQKATERNDKVDSVGIQMQD 145
           F+D F  T     S KK  K ++         +  K+ +K+ K   +  K    G Q   
Sbjct: 529 FIDIFEQTF----SSKKNAKFISMASTSARRFR-WKTCLKIWKEACKLSKTVLDGQQPLP 583

Query: 146 NKSGHRIGMRLRNLLKLPKAHKWVCFEYFYSNIDKVLFDGENDFMICLKE 195
           N    +   RL N ++L   ++W  FE    + +KVL  G N FM    E
Sbjct: 584 NPQKRQ--KRLSNQVEL--RNQWAKFEKEVEDFEKVLTGGSNGFMFSFVE 629


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 106 ILNKTPNKPPSAK--KQKSPIKVQKATERNDKVDSVGIQMQD 145
           ++NK   + P  K  K+KS  KVQK  +  + ++ + ++M+D
Sbjct: 26  LMNKNKKRKPEKKDDKEKSSKKVQKKNKVIESLNEMEVEMED 67


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)

Query: 402 LKEYNCMAEKRKSFGQRMPEDFERKYAAVVIELERMNMDLQEYINEIQH 450
           L E+    E  +    +M E F  K   VV+ L  MN+D   YI + +H
Sbjct: 789 LVEFENEIEAERESMHQMLETFRIKADVVVLCLAAMNLDAYRYIVKNEH 837


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 302 FERPKLGTHSVPDYEVLSNEPPDTICLTSITQRFRPRKVIQDLLSLYSPIQKNSQ 356
           F  P L    V DY+ L+N    T+ L  +TQ  RP  +    +     IQ N Q
Sbjct: 665 FTTPSLAEAVVKDYDFLTNLNATTLSL--LTQSNRPSTLFSSDIEYTPTIQLNRQ 717


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 185 GENDFMICLKESFPQLTNRKLTRTQWSKIRRM 216
           G+  F IC +  F +LT + L  T++ K  ++
Sbjct: 242 GQGAFAICCESVFKELTGKDLRNTKYGKPHKL 273


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,502
Number of Sequences: 5004
Number of extensions: 106774
Number of successful extensions: 336
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 10
length of query: 570
length of database: 2,362,478
effective HSP length: 76
effective length of query: 494
effective length of database: 1,982,174
effective search space: 979193956
effective search space used: 979193956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)