Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001154-TA|BGIBMGA001154-PA|IPR010561|DIRP
         (570 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    30   0.045
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    30   0.045
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             28   0.18 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   5.1  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 30.3 bits (65), Expect = 0.045
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 396 KSKINKLKEYNCMAEKRKSFGQRMPEDFERKYAAVVIELERMNMDLQEYINE--IQHHCQ 453
           + K+ +++EY    +  +   QR+ E FE +Y     + E +  +L E + E  I ++C+
Sbjct: 389 REKVKQVEEYMAYRKLPREMRQRITEYFEHRYQGKFFDEELILGELSEKLREDVINYNCR 448

Query: 454 QI 455
            +
Sbjct: 449 SL 450


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 30.3 bits (65), Expect = 0.045
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 396 KSKINKLKEYNCMAEKRKSFGQRMPEDFERKYAAVVIELERMNMDLQEYINE--IQHHCQ 453
           + K+ +++EY    +  +   QR+ E FE +Y     + E +  +L E + E  I ++C+
Sbjct: 357 REKVKQVEEYMAYRKLPREMRQRITEYFEHRYQGKFFDEELILGELSEKLREDVINYNCR 416

Query: 454 QI 455
            +
Sbjct: 417 SL 418


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 28.3 bits (60), Expect = 0.18
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 493  PSVLDLITDLTALMLQVRSLSDSDQNAYELSVLQGTMDQIKMKLKPQYHRLFQNNVEIHM 552
            P+V  ++ +      ++R L +  +NA   +++Q    Q + + + Q  +  Q   + H 
Sbjct: 1179 PNVPTILPEQYFATSRIRGLQEQQRNA---AMVQQQQQQQQQQQQQQQQQQQQQQQQQHQ 1235

Query: 553  HKIQMGLGQMIFEYSAGT 570
             + + G+G  I E SAGT
Sbjct: 1236 AREREGVGAGIAETSAGT 1253


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 498 LITDLTALMLQVRSLSDSDQNAYELSV-LQGTMDQIKMKLKPQYHRLFQNNVEIHMHKI 555
           ++ DL AL+     ++D   + +   + L GT   +++KL     +L    +E  M K+
Sbjct: 326 VMPDLNALIATGLYINDLSMHDFSRDLMLAGTQQSVELKLALDQEQLKSKKLEESMRKL 384


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,804
Number of Sequences: 429
Number of extensions: 6690
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 4
length of query: 570
length of database: 140,377
effective HSP length: 61
effective length of query: 509
effective length of database: 114,208
effective search space: 58131872
effective search space used: 58131872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)