Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001153-TA|BGIBMGA001153-PA|undefined
         (203 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   31   0.66 
SB_16717| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_34041| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_32230| Best HMM Match : Keratin_B2 (HMM E-Value=0.22)               29   2.7  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               28   6.2  
SB_33383| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.016)         27   8.2  
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 46  NSRGQILPARGSGYPYTKPIIPFSDEEVDRGSSINANRWQSNG 88
           N RG   P RG GY  T      SD   DRG + N N W+ +G
Sbjct: 152 NRRGGFDPGRGRGYDPTLRSRITSDSTWDRGEN-NDNNWRFSG 193


>SB_16717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 735

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 1   MLSSEIASTKFNSHVSVSTPALTFTHGVGDPVFVYDSRPNQPPVGNSRGQILP 53
           ML+SE        H ++  P       VG P   ++SRP +PP G  R +ILP
Sbjct: 551 MLNSEQGGRARTLHRNLLLPVERTYQPVGLPPD-HNSRPRRPPEGKRRRRILP 602


>SB_34041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/44 (29%), Positives = 27/44 (61%)

Query: 148 SEAVAAVQKAKDHGNLYFHEIPHIQSLFENQELRVKNNLKPHIV 191
           ++A+ A +  K + N+  HE+   ++L  N+  R+ NN++ H+V
Sbjct: 230 NKALCANKSGKLNNNIRGHEVRVNKALCVNKSGRLNNNIRGHVV 273


>SB_32230| Best HMM Match : Keratin_B2 (HMM E-Value=0.22)
          Length = 254

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 6   IASTKFNSHVSVSTPALTFTHGVGDPVF 33
           IA+T ++ H  + TP +  TH  G PVF
Sbjct: 77  IANTHYSGHPLLQTPTIADTHYCGYPVF 104


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 2/101 (1%)

Query: 13  SHVSVSTPALTFTHGVGDPVFVYDSRPNQPPVGNSRGQILPARGSGYPYTKPIIPFSDEE 72
           SH + S   LT  + +  P     +  N+  V         A  S +PY+ P  P    E
Sbjct: 333 SHQTYSGSGLTSPNAINGPQITSPNDYNESVVHQQHAANGRAVTSLHPYSGPGAPLPHSE 392

Query: 73  VDRGSSINANRWQSNGYREVSIP--ILPPSPYKVDSPDPES 111
               S  N NR     Y E S P   LP +    ++  P S
Sbjct: 393 TAVASLNNHNRSTVTPYHEHSGPAVTLPQNYTTTEATKPYS 433


>SB_33383| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.016)
          Length = 251

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 133 SDAESETFDPYLLEGSEAVAAVQKAKDHGNLYFHEIPHIQSLFENQEL 180
           +D E  TF    L G +A  AV    +HG+LY + +  ++  F N+EL
Sbjct: 73  TDTERMTFLQRSLTG-DAKDAVGGMLNHGHLYKYVLLELEEQFGNEEL 119


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/46 (30%), Positives = 19/46 (41%)

Query: 68  FSDEEVDRGSSINANRWQSNGYREVSIPILPPSPYKVDSPDPESLW 113
           F+D E   G  +    W + GY   SI  LP    +   P P + W
Sbjct: 493 FNDLERCEGYEVRVRAWTAGGYGNYSIVELPNECVRRALPLPPNSW 538


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,012,006
Number of Sequences: 59808
Number of extensions: 284049
Number of successful extensions: 509
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 13
length of query: 203
length of database: 16,821,457
effective HSP length: 79
effective length of query: 124
effective length of database: 12,096,625
effective search space: 1499981500
effective search space used: 1499981500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)