Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001153-TA|BGIBMGA001153-PA|undefined
(203 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 29 1.7
At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR... 29 2.2
At5g57320.1 68418.m07160 villin, putative similar to villin 2 (V... 28 3.8
At2g23450.2 68415.m02800 protein kinase family protein contains ... 28 3.8
At2g23450.1 68415.m02799 protein kinase family protein contains ... 28 3.8
At5g50360.1 68418.m06237 expressed protein 27 6.7
At2g17510.1 68415.m02025 ribonuclease II family protein similar ... 27 6.7
At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein ... 27 8.8
At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein ... 27 8.8
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 62 TKPIIPFSDEEVDRGSSINANRWQSNGYREVSIPIL 97
+K I+PF D+E+ RG SI +Q+ +++I +L
Sbjct: 86 SKGIVPFIDDEMKRGESIGPGLFQAIRESKIAIVLL 121
>At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Non-consensus TT donor splice site at exon 1
Length = 1104
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 62 TKPIIPFSDEEVDRGSSINANRWQSNGYREVSIPIL 97
+K I PF D+E++RG +I Q+ VSI +L
Sbjct: 37 SKGITPFKDQEIERGHTIGPELIQAIRESRVSIVVL 72
>At5g57320.1 68418.m07160 villin, putative similar to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
(VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
profiles PF00626: Gelsolin repeat, PF02209: Villin
headpiece domain
Length = 962
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 72 EVDRGSSINANRWQSNGYREVSIPILPPSPYKVDSPDPES 111
E + SSIN + + E S+P P K DS DP S
Sbjct: 878 EEEAMSSINEDSKEEEAEEESSLPTFPYERLKTDSEDPVS 917
>At2g23450.2 68415.m02800 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 708
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 29 GDPVFVYDSRPNQPPVGNSRGQILPARGSGYPYT 62
GDPV VY+ PN G + RGSG P+T
Sbjct: 415 GDPVLVYEYMPN----GTLSEHLQRDRGSGLPWT 444
>At2g23450.1 68415.m02799 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 708
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 29 GDPVFVYDSRPNQPPVGNSRGQILPARGSGYPYT 62
GDPV VY+ PN G + RGSG P+T
Sbjct: 415 GDPVLVYEYMPN----GTLSEHLQRDRGSGLPWT 444
>At5g50360.1 68418.m06237 expressed protein
Length = 291
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 86 SNGYRE-VSIPILPPSPYKVDSP 107
S G RE V++P+LP +P K DSP
Sbjct: 99 SGGGREIVTLPLLPETPEKKDSP 121
>At2g17510.1 68415.m02025 ribonuclease II family protein similar to
SP|P37202 Mitotic control protein dis3
{Schizosaccharomyces pombe}; contains Pfam profile
PF00773: RNB-like protein
Length = 933
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 55 RGSGYP---YTKPIIPFSDEEVDRGSSINANRWQSNGYREVSIPILPPSPYKVDSPD 108
R S YP Y +PI D+E + + N + + + LPP P+ V S D
Sbjct: 407 RQSRYPSGHYVRPIGKIGDKETETEVVLIENDVDYSPFSSQVLACLPPLPWSVSSED 463
>At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 33 FVYDSRPNQPPVGNSRGQILPARGSGYPYTKPIIPF 68
FV +RP QP GN R G + P++P+
Sbjct: 302 FVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPY 337
>At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 33 FVYDSRPNQPPVGNSRGQILPARGSGYPYTKPIIPF 68
FV +RP QP GN R G + P++P+
Sbjct: 302 FVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPY 337
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.133 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,044,336
Number of Sequences: 28952
Number of extensions: 212928
Number of successful extensions: 389
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 9
length of query: 203
length of database: 12,070,560
effective HSP length: 78
effective length of query: 125
effective length of database: 9,812,304
effective search space: 1226538000
effective search space used: 1226538000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)
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