GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001153-TA|BGIBMGA001153-PA|undefined
         (203 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   5.9  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   5.9  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    25   7.8  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 13  SHVSVSTPALTFTHGVGDPVFVYDSRPNQPP-----VGNSRGQILPARGSGYPYTKPIIP 67
           S +S S P    TH        Y S+P  PP     + N    +      G+P  K +I 
Sbjct: 751 SSISPSMPPAPLTHANSSTPMNYVSQPESPPQSYESIQNDNELLQELLSMGFPREKAVIA 810

Query: 68  FSDEEVD 74
                 D
Sbjct: 811 LEATNYD 817


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 137 SETFDPYLLEGSEAVAAVQKAKDHGNLYFHEIPHIQSLFENQELRVKN 184
           ++ F  Y+L  S+     QK++D     F+ + +I     NQ   VK+
Sbjct: 493 NDAFSFYILNASDGSVISQKSRDFKADEFYYVDNISKNLPNQIFAVKD 540


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 70  DEEVDRGSSINA-NR-WQSNGYREV----SIPILPPSPYKVDSPDPESL 112
           D+  D GS+I   NR  Q  G  E+    S    PPSP  V +P  ESL
Sbjct: 494 DDRNDEGSTITGVNRELQDEGRLEIDAKSSKTNTPPSPLLVGTPSKESL 542


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 975,138
Number of Sequences: 5004
Number of extensions: 40439
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 3
length of query: 203
length of database: 2,362,478
effective HSP length: 70
effective length of query: 133
effective length of database: 2,012,198
effective search space: 267622334
effective search space used: 267622334
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)