GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001153-TA|BGIBMGA001153-PA|undefined
         (203 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971...    29   2.0  
07_03_0146 + 14389350-14390372                                         29   2.6  
02_05_0053 - 25442186-25443189,25444359-25444914                       29   3.5  
11_03_0109 - 10103163-10103262,10103469-10103800,10103963-10104121     28   4.6  
10_06_0017 - 9665329-9667642,9672132-9672310                           28   6.0  
02_05_0842 - 32138519-32138527,32138638-32139090                       28   6.0  
02_03_0280 - 17256524-17256733,17256838-17256958,17257318-172574...    28   6.0  
02_05_1145 + 34429060-34429401,34430053-34430967                       27   8.0  

>01_06_0160 -
           27095727-27096008,27096164-27096652,27096983-27097132,
           27097656-27097920,27097995-27098274,27100311-27100388,
           27100597-27101240,27101334-27101412,27101489-27101612,
           27101782-27101882,27102870-27103068
          Length = 896

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 1   MLSSEIASTKFNSHV-SVSTPALTFTHGVGDPVFVYDSRPNQ--PPVGNSRGQILPARGS 57
           +LS+++A TK+N  V + S PA++    +  P    +++P Q  P      G  LP + S
Sbjct: 615 LLSTQLA-TKYNPPVPTTSLPAISMQETL-KPGGFSNAQPTQNLPSASIPSGPPLPQQLS 672

Query: 58  GYPYTKPIIP 67
            +PY +P +P
Sbjct: 673 VHPYPQPTLP 682


>07_03_0146 + 14389350-14390372
          Length = 340

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 61  YTKPIIPFSDEEVDRGSSINANRWQSNGYREVSIPILPPSPYKVDSPDPESL 112
           +T P IP +  + +R  S +    Q N     + PI PPSP   D P PE++
Sbjct: 186 HTTPHIPNAYNDSNRRYSPDTRYGQYNNIAPQTQPIRPPSP-PPDPPRPETV 236


>02_05_0053 - 25442186-25443189,25444359-25444914
          Length = 519

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 140 FDPYLLEGSEAVAAVQKAKDHGNLYFHEIPHIQSLFENQELRVKNNLKPHIV 191
           F P +L     VAA+ +  D G +  + IP + + F   + +VK NL+  I+
Sbjct: 159 FWPAMLASYRVVAAIPELIDRGLVSEYGIPILANGFNKNQGQVKANLQAEII 210


>11_03_0109 - 10103163-10103262,10103469-10103800,10103963-10104121
          Length = 196

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 45  GNSRGQILPARGSGYPYTKPIIPFSDEEVDRGSSINANRW--QSNGYREVSIP-ILPPSP 101
           GNSRG+ +   GS  P    I   +  E+++G++    RW  Q  G R V++P + P SP
Sbjct: 13  GNSRGESVC--GSPNPLPSQIW-LNIRELEKGAARQRGRWRWQQEGRRLVAVPAVAPHSP 69


>10_06_0017 - 9665329-9667642,9672132-9672310
          Length = 830

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 32  VFVYDSRPNQPPVGNSRGQILPARGSGYPYTKPIIPFSDE---EVDRGSSINANRW 84
           VFV  + P++ P   +   +L    +GYP  K     SD+   EV RG+ + A R+
Sbjct: 147 VFVTTADPDKEPPLATANTVLSILAAGYPAGKVTCYVSDDAGAEVTRGAVVEAARF 202


>02_05_0842 - 32138519-32138527,32138638-32139090
          Length = 153

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 47  SRGQILPARGSGYPYTKPIIPFSDEE--VDRGSSINANRWQ 85
           S+G+ILP +  G+   +P     DE    DR S+  ++RW+
Sbjct: 74  SKGRILPLKDGGFSSGRPPTTLRDELRCDDRASAKGSSRWK 114


>02_03_0280 -
           17256524-17256733,17256838-17256958,17257318-17257445,
           17257603-17257671,17257757-17257882,17257970-17258235,
           17258341-17258535,17258614-17258694,17258729-17258851,
           17258941-17259201,17260044-17260130,17260260-17260578
          Length = 661

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 134 DAESETFDPYLLEGSEAVAAVQKAKDHGNLYF 165
           D E E++D  + E +E + A  K KD GN +F
Sbjct: 443 DKEKESWD--MKENTEKIEAAAKKKDEGNAWF 472


>02_05_1145 + 34429060-34429401,34430053-34430967
          Length = 418

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/65 (21%), Positives = 28/65 (43%)

Query: 15  VSVSTPALTFTHGVGDPVFVYDSRPNQPPVGNSRGQILPARGSGYPYTKPIIPFSDEEVD 74
           + V TP  + T    DP  + +S P+ PP+   +    PA  +     +     +D + +
Sbjct: 261 ILVPTPMYSSTSSHSDPESIAESNPHPPPMKKKKKAKKPAAPAAASDAEADADAADADYE 320

Query: 75  RGSSI 79
            G ++
Sbjct: 321 EGGAL 325


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,284,850
Number of Sequences: 37544
Number of extensions: 267776
Number of successful extensions: 431
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 429
Number of HSP's gapped (non-prelim): 8
length of query: 203
length of database: 14,793,348
effective HSP length: 79
effective length of query: 124
effective length of database: 11,827,372
effective search space: 1466594128
effective search space used: 1466594128
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)