GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001153-TA|BGIBMGA001153-PA|undefined
         (203 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-862|AAF47912.1|  707|Drosophila melanogaster CG13722-PA...    29   3.4  
AY069504-1|AAL39649.1|  861|Drosophila melanogaster LD22651p pro...    28   7.8  
AE014134-1340|AAF52557.1|  861|Drosophila melanogaster CG7154-PA...    28   7.8  

>AE014296-862|AAF47912.1|  707|Drosophila melanogaster CG13722-PA
           protein.
          Length = 707

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 20  PALTFTHGVGDPVFVYDSRPNQPPVGNSRGQILPARG---SGYPYTKPIIPF 68
           P +  + G   P  V    P QP       QI+P      SGY Y KP++PF
Sbjct: 52  PKVVESSGYSYPKPVVPFPPAQPKYTPPVQQIIPQEPKLVSGYSYPKPVVPF 103


>AY069504-1|AAL39649.1|  861|Drosophila melanogaster LD22651p
           protein.
          Length = 861

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 57  SGYPYTKPIIPFSDEEVDRGSSINANRWQSNGYREV-SIPILPPSPYKVDSP 107
           S  P TKPI P   +++  GSS N++  QS+    + S P  P     + SP
Sbjct: 182 SNCPVTKPIAPRKLDDILMGSSPNSSSLQSSSLGLIGSSPTKPLPDLLIPSP 233


>AE014134-1340|AAF52557.1|  861|Drosophila melanogaster CG7154-PA
           protein.
          Length = 861

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 57  SGYPYTKPIIPFSDEEVDRGSSINANRWQSNGYREV-SIPILPPSPYKVDSP 107
           S  P TKPI P   +++  GSS N++  QS+    + S P  P     + SP
Sbjct: 182 SNCPVTKPIAPRKLDDILMGSSPNSSSLQSSSLGLIGSSPTKPLPDLLIPSP 233


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.314    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,501,548
Number of Sequences: 52641
Number of extensions: 449225
Number of successful extensions: 733
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 16
length of query: 203
length of database: 24,830,863
effective HSP length: 81
effective length of query: 122
effective length of database: 20,566,942
effective search space: 2509166924
effective search space used: 2509166924
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)