GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001153-TA|BGIBMGA001153-PA|undefined
         (203 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73098-10|CAA97336.2|  391|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z71177-4|CAA94870.1|  529|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    27   7.1  
Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U29380-8|AAP68925.1|  334|Caenorhabditis elegans Mediator protei...    27   9.4  

>Z73098-10|CAA97336.2|  391|Caenorhabditis elegans Hypothetical
           protein T21C9.9 protein.
          Length = 391

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 35  YDSRPNQPPVGNSRGQILPARGSGYPYTKPIIPFSDEEVDRGSSINANRWQSNGYREVSI 94
           Y SRP   P   +     P R    PY +P  P ++    R ++++ N +     R    
Sbjct: 108 YISRPAPRP---APAPYQPPRVQERPYVQPAAPVAELAETRKNTLHDNGYGEEIERTTYT 164

Query: 95  PILPPSP-YKVDSP 107
           P++  +P Y+ D+P
Sbjct: 165 PVVTAAPVYETDAP 178


>Z71177-4|CAA94870.1|  529|Caenorhabditis elegans Hypothetical
           protein AC3.7 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/51 (31%), Positives = 23/51 (45%)

Query: 140 FDPYLLEGSEAVAAVQKAKDHGNLYFHEIPHIQSLFENQELRVKNNLKPHI 190
           FD Y LE +E + +  K       +  +  HI  L  NQ +  K NL  H+
Sbjct: 416 FDKYDLEDAEKLTSAIKEIIGNEEFNKKSHHIADLLRNQPIDPKANLLKHV 466


>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 2/110 (1%)

Query: 69   SDEEVDRGSSINANRWQSNGYREVSIPILPPSPYKVDSPDPESLWXXXXXXXXXXXXXXX 128
            + EE+D  + I +   QS+  +  +IP  PP P ++ + D   +                
Sbjct: 2800 TQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGT 2859

Query: 129  XXXRSDAESETFD--PYLLEGSEAVAAVQKAKDHGNLYFHEIPHIQSLFE 176
               RS  +  T++    LLE SE    + K  +        I  IQSL E
Sbjct: 2860 DYERSFDQDVTYERSSPLLEPSEEPVMLSKEAELTQEEIDHIAIIQSLAE 2909



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 69  SDEEVDRGSSINANRWQSNGYREVSIPILPPSPYK---VDSPDPESLWXXXXXXXXXXXX 125
           + EE+D  + I ++  QS+  +  ++P  PP P +   VD P   S              
Sbjct: 748 TQEEIDHIAWIQSSAEQSSFEQASTVPDRPPLPVRLPTVDEPIVSSEQHEEDRSSATSGA 807

Query: 126 XXXXXXRSDAESETFDPYLLEGSEAVAAVQKAKDHGNLYFHEIPHIQSLFE 176
                   DA  E   P LLE  E      +  +        I  IQSL E
Sbjct: 808 DYERSFDQDATYERSSP-LLEPCEEPVMESRVPELTQEEIDHIARIQSLAE 857



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 2/110 (1%)

Query: 69   SDEEVDRGSSINANRWQSNGYREVSIPILPPSPYKVDSPDPESLWXXXXXXXXXXXXXXX 128
            + EE+D  + I +   QS+  +  +IP  PP P ++ + D   +                
Sbjct: 2263 TQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGA 2322

Query: 129  XXXRSDAESETFD--PYLLEGSEAVAAVQKAKDHGNLYFHEIPHIQSLFE 176
               RS  +  T++    LLE SE      K  +        I  IQSL E
Sbjct: 2323 DYERSFDQDVTYERSSPLLEPSEDPVMESKEPELTQEEIDHIARIQSLAE 2372


>Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical
           protein R08D7.3 protein.
          Length = 570

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 46  NSRGQILPARGSGYPYTKPIIPFSDEEV-DRGSSINANRWQ-SNG 88
           N R Q++    +G+ +     PF DEE  + G++    +W   NG
Sbjct: 346 NFRRQVVKRNDAGFTFKNARAPFEDEETGESGTAYKYRKWNLGNG 390


>U29380-8|AAP68925.1|  334|Caenorhabditis elegans Mediator protein 4
           protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 14/97 (14%)

Query: 17  VSTPALTFTHGVGDPVFVYDSRPNQPPVGNSR--GQILPARGSGYPYTKPIIPFSDEEVD 74
           +++P+ + ++G   P+     R    P+ NS   G   P  G G     PI     ++V 
Sbjct: 195 ITSPSASSSNGGTAPI-----RTVGTPLINSAPTGDFSPRTGFGTDEPPPI----QQQVL 245

Query: 75  RGSSINANRWQSNGYREVSIPILPPSPYKVDSPDPES 111
           RG++ N  +WQ+ G   VS      SPY   S  P S
Sbjct: 246 RGATPNEKQWQNPG---VSGATSTQSPYNRVSQSPSS 279


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,203,508
Number of Sequences: 27539
Number of extensions: 218322
Number of successful extensions: 364
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 34
length of query: 203
length of database: 12,573,161
effective HSP length: 78
effective length of query: 125
effective length of database: 10,425,119
effective search space: 1303139875
effective search space used: 1303139875
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)