Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001152-TA|BGIBMGA001152-PA|IPR013057|Amino acid
transporter, transmembrane, IPR008333|Oxidoreductase FAD-binding
region, IPR001433|Oxidoreductase FAD/NAD(P)-binding,
IPR001834|NADH:cytochrome b5 reductase (CBR), IPR001709|Flavoprotein
pyridine nucleotide cytochrome reductase
         (512 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   4.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.6  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 338 LSQYLNNMKINDTIDVRGPSGRL--QYT-GNGTFLIKKLRKDPPTKVVVKKLNLIAG 391
           L + L  ++ N+ +  R PS R+  Q+T GN   L +KL K    K   K L ++ G
Sbjct: 287 LEEPLTTIQHNNCL-TRIPSTRINKQHTRGNNFSLSRKLAKFAKEKKAAKTLGIVMG 342


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 388 LIAGGTGIAPMLQLVRHICTDVNDRTELK 416
           L+  GTGIAP      H   ++  R +L+
Sbjct: 970 LVGPGTGIAPFRGFWHHRLAEIKRRPDLE 998


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.142    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,467
Number of Sequences: 429
Number of extensions: 6452
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 2
length of query: 512
length of database: 140,377
effective HSP length: 61
effective length of query: 451
effective length of database: 114,208
effective search space: 51507808
effective search space used: 51507808
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)