Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001151-TA|BGIBMGA001151-PA|IPR013057|Amino acid
transporter, transmembrane
(253 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43965| Best HMM Match : Aa_trans (HMM E-Value=7.5e-08) 116 2e-26
SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 6e-14
SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 8e-14
SB_42790| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 8e-07
SB_43964| Best HMM Match : Aa_trans (HMM E-Value=9.2e-05) 51 1e-06
SB_42788| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31) 50 1e-06
SB_17613| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_42789| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_27382| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_27863| Best HMM Match : rve (HMM E-Value=4.7e-35) 31 1.2
SB_27381| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_46774| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-09) 30 1.6
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_57961| Best HMM Match : Ion_trans (HMM E-Value=2.5e-38) 29 3.7
SB_54310| Best HMM Match : Aa_trans (HMM E-Value=1.9e-23) 29 3.7
SB_53892| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6) 29 4.9
SB_13472| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_43965| Best HMM Match : Aa_trans (HMM E-Value=7.5e-08)
Length = 373
Score = 116 bits (278), Expect = 2e-26
Identities = 68/182 (37%), Positives = 98/182 (53%), Gaps = 5/182 (2%)
Query: 68 AFAAQLFSEFALFFTYIGVCCIFTVLIADSLKQLFDEYVTTTVLPVEYYCLIILVPLCLM 127
A ++ L T G C I+ + +A+SL+Q FD Y T+ L V+ + LIILVP+ L+
Sbjct: 87 AHIGRILINIFLLITMFGFCAIYFLFVAESLQQAFDAY-TSFKLDVKLWVLIILVPVILL 145
Query: 128 VQIRHLKWLAPFSFIANILLIATFVICMYYIFGDEINFTDKRISGDLSRLPAFLSTVIFA 187
IR LK LA S ++N+L + +C+ G ++ LP V+F
Sbjct: 146 SFIRTLKILAVLSSVSNVLALFG-TVCVLSYAGSTVHDPSTLPLTQWKTLPLAFGAVVFT 204
Query: 188 MEGIGVVMPVENTMKKPQHFLGCPSVLVVAMSTIMLMYSILGLFGYFRYGDVLRGSITLN 247
EGIGV++PVEN M P+ F VL MS + L+Y ++G+ GY G +GSITLN
Sbjct: 205 YEGIGVILPVENMMAIPRRFRW---VLYAGMSLVTLLYLLMGVLGYLSCGTSCQGSITLN 261
Query: 248 LP 249
LP
Sbjct: 262 LP 263
>SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 74.9 bits (176), Expect = 6e-14
Identities = 44/126 (34%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 111 LPVEYYCLIILVPLCLMVQIRHLKWLAPFSFIANILLIATFVICMYYIFGDEINFTDKRI 170
L + + +I+LVP+ L+ I L+ L+ S +ANI + VI Y+ + N
Sbjct: 112 LDPKIWIVILLVPVILLSYIHSLRVLSVLSTMANICCLIGLVITFQYLGRNVHNPKLLPE 171
Query: 171 SGDLSRLPAFLSTVIFAMEGIGVVMPVENTMKKPQHFLGCPSVLVVAMSTIMLMYSILGL 230
+ LP F V+F EGIGVV+P+EN M +PQHF VL V M I+ ++ ++G+
Sbjct: 172 FDGWAALPLFFGMVVFTFEGIGVVLPLENQMARPQHF---RLVLNVGMGIILAIFYLMGV 228
Query: 231 FGYFRY 236
GY +
Sbjct: 229 LGYLAF 234
>SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 74.5 bits (175), Expect = 8e-14
Identities = 71/269 (26%), Positives = 123/269 (45%), Gaps = 34/269 (12%)
Query: 12 VGIIGTIVIAFVCGHCVHIFVKTSRGCC-KLVRR------PLLSYSETCK--AAFE---- 58
+G IG +IA + HC + +K + K++R+ P +S SE + A E
Sbjct: 389 LGSIGLFIIAILTDHCCQLIIKCKKSAVGKILRKMPKYNNPRISLSEKLELEAKVEKKMM 448
Query: 59 HGPKSLRPFAFAAQLFSEFALFFTYIGVCCIFTVLIADSLKQLF----DEYVTTTVL--- 111
+G + E +L T I C + + I ++++ LF + V +T+
Sbjct: 449 YGDIGKVALGKPGLVLVEVSLLITQIMFCVGYFIFIGNTIQGLFVIKKTDVVNSTLANTT 508
Query: 112 -------PVEYYCLIIL---VPLCLMVQIRHLKWLAPFSFIANILLIATFVICM-YYIFG 160
V + L++L VPL LM IR ++ L P SFI+N+ L+ F+ + Y + G
Sbjct: 509 NTDSKNSSVPSFPLLLLIPVVPLILMAFIRRVRKLGPVSFISNLALLFAFLAVLGYMLTG 568
Query: 161 DEINFTDKRISGDLSRLPAFLSTVIFAMEGIGVVMPVENTMKKPQHFLGCPSVLVVAMST 220
+ R+ S P F V A +GIG ++P+E++M + +H P L +A+
Sbjct: 569 WTFKLNEIRLF-SWSTFPVFFGQVTSAYQGIGTLIPIESSMAENRH--RYPLYLHLALGL 625
Query: 221 IMLMYSILGLFGYFRYGDVLRGSITLNLP 249
+ + G+ GY YG+ + +T LP
Sbjct: 626 LSAILGGFGITGYLVYGENVDQIVTSELP 654
>SB_42790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 51.2 bits (117), Expect = 8e-07
Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 87 CCIFTVLIADSLKQLFDEYVTTTVLPVEYY--CLIILVPLCLMVQIRHLKWLAPFSFIAN 144
C + +++ +++ ++T E Y C +LVPL L+ Q+ L WL S +A
Sbjct: 249 CVVLFMMLGNTVFSFLKSFMTLGFGLNECYLICAALLVPLVLIHQLTVLAWL---SMLAV 305
Query: 145 ILLIATFVICMYYIFGDEINFTDKRISG-DLSRLPAFLSTVIFAMEGIGVVMPVENTMKK 203
+ LI I + Y + ++ I D++ P + ++F+ G V +E++M+K
Sbjct: 306 LSLITCLFIIIGYSLQEWQSWKIHNIPDFDINNFPVAIGIIVFSYCGHSVFPGIESSMRK 365
Query: 204 PQHFLGCPSVLVVAMSTIMLMYSILGLFGYFRYGDVLRGSITLNL 248
P+ F + + +++ L +GL YG ITLN+
Sbjct: 366 PRKF---KKIACTSFTSVTLCKVAIGLLCCLLYGPHTLPLITLNI 407
>SB_43964| Best HMM Match : Aa_trans (HMM E-Value=9.2e-05)
Length = 332
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 193 VVMPVENTMKKPQHFLGCPSVLVVAMSTIMLMYSILGLFGYFRYGDVLRGSITLNLP 249
+V+PVEN M+ P+ F VL +AMS ++++Y ++G GY + +GS TLNLP
Sbjct: 134 LVLPVENMMRTPRDFTW---VLNLAMSVVVILYLVVGTMGYISCAAMCKGSFTLNLP 187
>SB_42788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 50.4 bits (115), Expect = 1e-06
Identities = 47/248 (18%), Positives = 102/248 (41%), Gaps = 13/248 (5%)
Query: 1 MPLAFSNSGWAVGIIGTIVIAFVCGHCVHIFVKTSRGCCKLVRRPLLSYSETCKAAFEHG 60
+P A GWA G+ +V+A+VC + V C + + +
Sbjct: 131 VPYAVRMGGWA-GVAAIVVVAWVCCFTGKLLVD-----CLYEESKRTGQRKRVRENYPDV 184
Query: 61 PKSLRPFAFAAQLFSEFALFFTYIGVCCIFTVLIADSLKQLFDEYVTTTVLPVEYYCLII 120
++ P + ++ S + Y G+ ++ VL+A + ++ + C ++
Sbjct: 185 GEATWP-GWGNKIVSVVQVCEMYGGIV-MYIVLLATIFYDMLKDFAPLDIYMWAVACAVV 242
Query: 121 LVPLCLMVQIRHLKWLAPFSFIANILLIATFVICMYYIFGDEINFTDKRISGDLSRLPAF 180
+PL + ++ + W++ S A + + +I + F D ++ + + + S P
Sbjct: 243 ALPLIFITRVSVIAWISMMSVFALLSGLLAIIIYCFTEF-DRMSLRNIPVF-EPSTFPIG 300
Query: 181 LSTVIFAMEGIGVVMPVENTMKKPQHFLGCPSVLVVAMSTIMLMYSILGLFGYFRYGDVL 240
++F+ V VE +M+ PQ F P ++ + + +LGL R+GD
Sbjct: 301 FGIIVFSYCAHAVFPGVEGSMQDPQKF---PLMMNTSFTLAAFNKVLLGLLAVLRFGDQT 357
Query: 241 RGSITLNL 248
+T+N+
Sbjct: 358 EQVVTVNM 365
>SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)
Length = 974
Score = 50.4 bits (115), Expect = 1e-06
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 11/127 (8%)
Query: 118 LIILVPLCLMVQ---IRHLKWLAPFSFIANILLIATFVICMYYIF-GDEINFTDKRISGD 173
L++L+PL +V IR ++ L P S +ANI L+A F + I G D ++
Sbjct: 578 LLLLIPLPFVVAMAFIRKIRKLGPISGLANIALLAGFFGLLVQILDGLHFKLNDVTLANW 637
Query: 174 LSRLPAFLSTVIFAMEGIGVVMPVENTM--KKPQHFLGCPSVLVVAMSTIMLMYSILGLF 231
++ P F + A EGIG ++P+E+ M +P+ P L + ++ + ++ G+
Sbjct: 638 IT-FPIFFGQLTCAYEGIGCIIPIESGMGSNRPRF----PLYLHLTLAQLSVLLGSFGVL 692
Query: 232 GYFRYGD 238
G+ YG+
Sbjct: 693 GFLIYGN 699
Score = 36.7 bits (81), Expect = 0.019
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 1 MPLAFSNSGWAVGIIGTIVIAFVCGHCVHIFVKTSR 36
+P AF SG A+GI+ ++IA + HC + +K +
Sbjct: 404 LPFAFKQSGLALGIVALVLIATITDHCCQMIIKCKK 439
>SB_17613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1004
Score = 48.8 bits (111), Expect = 4e-06
Identities = 57/255 (22%), Positives = 106/255 (41%), Gaps = 27/255 (10%)
Query: 1 MPLAFSNSGWAVGIIGTIVIAFVCGHCVHIFVKTSRGCCKL---VRRPLLSYSETCKAAF 57
+P + GWA GI +++A+VC + ++ K ++R +Y E A +
Sbjct: 437 IPYSVRMGGWA-GITTILILAWVCCFTGKLLIECLYSESKSTGKIKRVYTNYPELGGAVW 495
Query: 58 EHGPKSLRPFAFAAQLFSEFALFFTYIGVCCIFTVLIADSLKQLFDEYVTTTVLPVEYY- 116
PK Q+ F YI VL+A L LF T T L +++
Sbjct: 496 ---PKFGNHLVSVIQVCEMFGGTIMYI-------VLLATLLTDLF---TTCTPLRQQHWA 542
Query: 117 --CLIILVPLCLMVQIRHLKWLAPFSFIANILLIATFVICMYYIFGDEINFTDKRISG-D 173
C I +PL + ++ + W + S A + T +I Y + + + I D
Sbjct: 543 VICTYIALPLAFVRRVSVIAWASMISVFAFTCALTTIII---YTITQYHHMSIQNIPAFD 599
Query: 174 LSRLPAFLSTVIFAMEGIGVVMPVENTMKKPQHFLGCPSVLVVAMSTIMLMYSILGLFGY 233
++ P ++F+ V VE +M+ P+ + P ++ VA ++ + LGL
Sbjct: 600 FTKFPVGFGIIVFSYTAHAVFPGVEASMRNPRMY---PQMMNVAFVVAAIVKTSLGLLTV 656
Query: 234 FRYGDVLRGSITLNL 248
+G + ++T+N+
Sbjct: 657 MVFGTTTQQAVTVNI 671
>SB_42789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 507
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/161 (18%), Positives = 73/161 (45%), Gaps = 7/161 (4%)
Query: 89 IFTVLIADSLKQLFDEYVTTTVLPVEYYCLIILVPLCLMVQIRHLKWLAPFSFIANILLI 148
++ +L+ Q+ ++Y++ ++ C + ++P + ++ + W+ S IA + L+
Sbjct: 203 LYLILLTTMFSQITEKYISLSMNVWAVLCAVAVLPSVFITRLSLIAWM---SMIAVLALM 259
Query: 149 ATFVICMYYIFGDEINFTDKRI-SGDLSRLPAFLSTVIFAMEGIGVVMPVENTMKKPQHF 207
++ + + Y + ++ I + D + P V F+ V +E +MK P+++
Sbjct: 260 SSIAVTLAYCILNYDRWSINNIPTFDGNTFPIGFGIVTFSYCAHAVFPGIEASMKHPENY 319
Query: 208 LGCPSVLVVAMSTIMLMYSILGLFGYFRYGDVLRGSITLNL 248
+ +T+ ++ G F +G V +T+NL
Sbjct: 320 NKMMHTSFLVSATVKTLF---GAFAVLTFGLVTDQVVTVNL 357
>SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 32.7 bits (71), Expect = 0.30
Identities = 30/173 (17%), Positives = 69/173 (39%), Gaps = 10/173 (5%)
Query: 80 FFTYIGVCCIFTVLIADSLKQLFDEYVTTTVLPVEYYCLI--ILVPLCLMVQIRHLKWLA 137
FF C +F ++ + F + + L + C++ +VP + ++H+ ++
Sbjct: 115 FFEQFSHCTLFLIMCGTVMHHTFPDSGISESL---WICIVSFAVVPCAFVRTMKHISHIS 171
Query: 138 PFSFIANILLIATFVICMYYIFGDEINFTDKRISGDLSRLPAFLSTVIFAMEGIGVVMPV 197
+ I + + ++ + Y ++ + T S + + + V + +
Sbjct: 172 ILTVIVS--MGSSTCVLGYSLYHHDDWKTHNLTSFNFRHMSIAMGIVTVTFSSTAYLPAI 229
Query: 198 ENTMKKPQHFLGCPSVLVVAMSTIMLMYSILGLFGYFRYGDVLRGSITLNLPI 250
E +MK P F + ++ I Y G+ YF +G +TL+LP+
Sbjct: 230 ERSMKYPAEFNAMMNFTYTLVTIIKYNY---GILVYFAFGKHTEQLMTLSLPL 279
>SB_27382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 31.5 bits (68), Expect = 0.70
Identities = 33/159 (20%), Positives = 70/159 (44%), Gaps = 6/159 (3%)
Query: 92 VLIADSLKQLFDEYVTTTVLPVEYYCLIILVPLCLMVQIRHLKWLAPFSFIANILLIATF 151
+++A SL L D + +L + + V + + + LK +A S I+NI LI +F
Sbjct: 88 LVVASSL--LVDVEIPGLILTQSSWAALAGVCVFPALFCKSLKSMAWVSCISNITLIISF 145
Query: 152 VICMYYIFGDEINFTDKRI-SGDLSRLPAFLSTVIFAMEGIGVVMPVENTMKKPQHFLGC 210
+I + + + + + D + ++ ++F+ VV+ +E +M F
Sbjct: 146 IIVLISEVSNYAAWDFRTLFFWDTRGVLFSINIIVFSYSIQAVVIDIEESMTHRSRF--- 202
Query: 211 PSVLVVAMSTIMLMYSILGLFGYFRYGDVLRGSITLNLP 249
VL + S + ++ +FG+ + + LN+P
Sbjct: 203 NWVLTMTYSAACAVKTLFAVFGFLSFKQNTNQVVILNIP 241
>SB_27863| Best HMM Match : rve (HMM E-Value=4.7e-35)
Length = 742
Score = 30.7 bits (66), Expect = 1.2
Identities = 33/159 (20%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 92 VLIADSLKQLFDEYVTTTVLPVEYYCLIILVPLCLMVQIRHLKWLAPFSFIANILLIATF 151
+++A SL L D + +L + + V + + + LK +A S I+NI LI +F
Sbjct: 449 LVVASSL--LVDVEIPGLILTQSSWAALAGVCVFPALFCKSLKSMAWVSCISNITLIISF 506
Query: 152 VICMYYIFGDEINFTDKRISGDLSRLPAF-LSTVIFAMEGIGVVMPVENTMKKPQHFLGC 210
+ + + + + + +R F ++ ++F+ VV+ +E +M F
Sbjct: 507 IAVLISELSNYATWDFRTLFFWDTRGVLFSINIIVFSYSIQAVVIDIEESMTHRSRFNW- 565
Query: 211 PSVLVVAMSTIMLMYSILGLFGYFRYGDVLRGSITLNLP 249
VL + S ++ ++ +FG+ + + LN+P
Sbjct: 566 --VLTMTYSASCVVKTLFAVFGFLSFKKNTNQVVILNIP 602
>SB_27381| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1392
Score = 30.7 bits (66), Expect = 1.2
Identities = 33/159 (20%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 92 VLIADSLKQLFDEYVTTTVLPVEYYCLIILVPLCLMVQIRHLKWLAPFSFIANILLIATF 151
+++A SL L D + +L + + V + + + LK +A S I+NI LI +F
Sbjct: 1099 LVVASSL--LVDVEIPGLILTQSSWAALAGVCVFPALFCKSLKSMAWVSCISNITLIISF 1156
Query: 152 VICMYYIFGDEINFTDKRISGDLSRLPAF-LSTVIFAMEGIGVVMPVENTMKKPQHFLGC 210
+ + + + + + +R F ++ ++F+ VV+ +E +M F
Sbjct: 1157 IAVLISELSNYATWDFRTLFFWDTRGVLFSINIIVFSYSIQAVVIDIEESMTHRSRFNW- 1215
Query: 211 PSVLVVAMSTIMLMYSILGLFGYFRYGDVLRGSITLNLP 249
VL + S ++ ++ +FG+ + + LN+P
Sbjct: 1216 --VLTMTYSASCVVKTLFAVFGFLSFKKNTNQVVILNIP 1252
>SB_46774| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-09)
Length = 225
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 42 VRRPLLSYSETCKAAFEHGPKSLRPFAFAAQLFSEFALFFTYIGVCCIFTVLIADSLKQL 101
+ +PL+ ++ F G SL P QLF+ +F+ +G+ T+L ++
Sbjct: 8 ISQPLMHPNDAIDQPFSPGYGSLTPKTPGGQLFT---IFYALVGI--PLTLLTLKAMGNH 62
Query: 102 FDEYVTTTVLPVEYYCL 118
++ Y+ ++ +E CL
Sbjct: 63 YNHYIKKLIILIETRCL 79
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 81 FTYIGVCCIFTVLIADSLKQLFDEYVTTTVLPVE--YYCLIILVPLCLMVQIRHLKWLAP 138
+ Y+G CIF + + SL+ L+ + L V Y CL + L V +R+L +L
Sbjct: 1692 YLYLGTICIFALSV--SLRYLYFCTICVFALSVSLRYLCLCAICVFALSVSLRYL-YLCA 1748
Query: 139 FSFIANILLIATFVICMY 156
A + + +C++
Sbjct: 1749 ICIFALSVSLHYLYLCVF 1766
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 78 ALFFTYIGVCCIFTVLIADSLKQLFDEYVTTTVLPVEYYCLIILVPLCLMVQIRHLKWLA 137
+L + Y CIF + ++ L + + + Y CL + L V +R+L +L
Sbjct: 1810 SLHYLYPCTICIFALSVSLHYLSLCAVCILALFVSLSYLCLCAICIFALSVSLRYL-YLC 1868
Query: 138 PFSFIANILLIATFVICMYYIF 159
A + + +C + IF
Sbjct: 1869 AICIFALSVSLRYLYLCAFCIF 1890
>SB_57961| Best HMM Match : Ion_trans (HMM E-Value=2.5e-38)
Length = 381
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 146 LLIATFVICMYYIFGDEINFTDKRISGDLSRLPAFLSTVI 185
+L+ F + YYIFG E + DK+ G+LS L T +
Sbjct: 159 MLMGFFAVVGYYIFGYEADTGDKKNWGNLSTAMLTLFTFV 198
>SB_54310| Best HMM Match : Aa_trans (HMM E-Value=1.9e-23)
Length = 977
Score = 29.1 bits (62), Expect = 3.7
Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 119 IILVPLCLMVQIRHLKWLAPFSFI-ANILLIATFVICMYYIFGDEINFTDKRISGDLSRL 177
I +P + + + W + + + A ++ IA F E+ D + ++
Sbjct: 467 IAFIPNIFLQNLSQVAWTSIITVLSAKVIFIAVFTYSAMQYQMWELASLD---NFEIHTF 523
Query: 178 PAFLSTVIFAMEGIGVVMPVENTMKKPQHFLGCPSVLVVAMSTIMLMYSILGLFGYFRYG 237
P+ L ++ + V +E +M+K +HF ++ +A +++ ++ I+G+ Y +
Sbjct: 524 PSALGILVASYLSQPFVPVIEGSMRKKEHF---NLLMNIAYTSMTVLNIIIGVVAYISFR 580
Query: 238 DVLRGSITLNLP 249
IT +LP
Sbjct: 581 PNTAEVITNSLP 592
>SB_53892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 221 IMLMYSILGLFGYFRYGDVLRGS 243
++ + + LG+ GY +YGDV RG+
Sbjct: 158 VVTLNNRLGVLGYLKYGDVFRGN 180
>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
Length = 399
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 87 CCIFTVLIADSL--KQLFDEYVTTTVLPVEYYCLIILVPLCLMVQIRHLKWLAPFSFIAN 144
C FT+L+ L L +Y+ T+L + Y C I+LV CL L ++
Sbjct: 123 CLCFTLLVMCYLCCTLLVMDYLCFTLLVMGYLCCILLVMGCLCFT------LLVMGYLCC 176
Query: 145 ILLIATFVICMYYIFG 160
LL+ ++ C + G
Sbjct: 177 TLLVMGYLCCSLLVMG 192
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 86 VCCIFTVLIADSLKQLFDEYVTTTVLPVEYYCLIILVP---LCLMVQIRHLKW-LAPFSF 141
+CCI V+ L Y+ T+L + Y C +LV C ++ + +L + L +
Sbjct: 154 LCCILLVMGCLCFTLLVMGYLCCTLLVMGYLCCSLLVMGYLCCTLLVMDYLCFTLLVMCY 213
Query: 142 IANILLIATFVICMYYIFG 160
+ LL+ ++ C + G
Sbjct: 214 LCCTLLVMDYLCCTLLVMG 232
>SB_13472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 27.9 bits (59), Expect = 8.6
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 102 FDEYVTTTVLPVEYYCLIILVPLCLMVQIRHLKWLAPFSFIANILLIATFVICMYY-IFG 160
F EY T L + Y +P L ++ L AP + N LL+ ++C+Y I
Sbjct: 60 FQEYATLCTLMLTYSVTKTAIPYLLYCVLKELSEPAPQT--NNALLLGA-ILCLYAGIKS 116
Query: 161 DEINFTDKRISGDLSRLPAFLSTVIFAMEGI-GVVM 195
+ + + S R+ L VIF G+ G VM
Sbjct: 117 TSLTYIEYHSSLFAMRVRTALCGVIFKKVGVWGRVM 152
>SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1020
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 125 CLMVQIRHLKWLAPFSFIANILLIATFVICMYYIFGDEINFTDKRISGDLSRLPAFLSTV 184
C+ V +R+L W +P+S + + I F++ I + F R S + +S V
Sbjct: 563 CVFVPLRYLNWRSPWSVVIVVWSILAFLLTNLTI----LMFIKHRTSPVVRACSFEISIV 618
Query: 185 IFAMEGIGVVMP 196
+ +G ++P
Sbjct: 619 LLCTIALGFLIP 630
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.333 0.146 0.469
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,706,046
Number of Sequences: 59808
Number of extensions: 288767
Number of successful extensions: 1038
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1007
Number of HSP's gapped (non-prelim): 31
length of query: 253
length of database: 16,821,457
effective HSP length: 80
effective length of query: 173
effective length of database: 12,036,817
effective search space: 2082369341
effective search space used: 2082369341
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.5 bits)
S2: 59 (27.9 bits)
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