Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001151-TA|BGIBMGA001151-PA|IPR013057|Amino acid
transporter, transmembrane
         (253 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 115 YYCLIILVPLCLMVQIRHLK-WLAPFSFIANILLIATFVICM 155
           YY + I +P C++V +  +  WL   +  A + L  T ++ M
Sbjct: 243 YYLIQIYIPCCMLVIVSWVSFWLDQSAVPARVSLGVTTLLTM 284


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 115 YYCLIILVPLCLMVQIRHLK-WLAPFSFIANILLIATFVICM 155
           YY + I +P C++V +  +  WL   +  A + L  T ++ M
Sbjct: 243 YYLIQIYIPCCMLVIVSWVSFWLDQSAVPARVSLGVTTLLTM 284


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 48  SYSETCKAAFEHGPKSLRPFAFAAQLFSEFALFFTYIGVCCI 89
           +Y+  C   +  G  +     F  +    + LF TYI  C I
Sbjct: 217 NYTADCTQVYSTGNFTCLEVVFVLKRRLGYYLFHTYIPTCLI 258


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.333    0.146    0.469 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,911
Number of Sequences: 429
Number of extensions: 2541
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 253
length of database: 140,377
effective HSP length: 56
effective length of query: 197
effective length of database: 116,353
effective search space: 22921541
effective search space used: 22921541
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.5 bits)
S2: 43 (21.4 bits)