GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001151-TA|BGIBMGA001151-PA|IPR013057|Amino acid
transporter, transmembrane
         (253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    58   1e-09
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    45   1e-05
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    27   2.6  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   4.6  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    26   4.6  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   6.1  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    26   6.1  
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    25   8.0  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    25   8.0  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 13/135 (9%)

Query: 119 IILVPLCLMVQIRHLKWLAPFSFIANILLIATFVICMYYIFGDEINFTDKRISG----DL 174
           ++ VPL L   +R +  L+  + IA++ ++      +Y  F D I    K I+     + 
Sbjct: 401 LVFVPLSL---VRKISKLSATALIADVFILLGI---LYLYFWDVITLATKGIADVAMFNK 454

Query: 175 SRLPAFLSTVIFAMEGIGVVMPVENTMKKPQHFLGCPSVLVVAMSTIMLMYSILGLFGYF 234
           +    F+   IF  EGI +++P++  M KP++    P +L   M+ I L++  +GL  Y 
Sbjct: 455 TDFSLFIGVAIFTYEGICLILPIQEQMAKPKNL---PKLLTGVMAAISLLFISIGLLSYA 511

Query: 235 RYGDVLRGSITLNLP 249
            +G  ++  + LN+P
Sbjct: 512 AFGSKVKTVVILNMP 526


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 49/214 (22%), Positives = 85/214 (39%), Gaps = 25/214 (11%)

Query: 47  LSYSETCKAAFEHGPKSLRPFAFAAQLFSEFALFFTY------IGVCCIFTVLIADSLKQ 100
           L +   C A    G  S    A A   F   A+ F         GV   + V++ D + Q
Sbjct: 67  LYFVSQCAARLPRGKASFA--AVAKHTFPSLAVVFDASIAVKCFGVAVSYLVIVGDLMPQ 124

Query: 101 LFDEYVTTTVLPVE-----YYCLIILVPLCLMVQIRHLKWLAPFSFIANILLIATFVICM 155
           +      ++ + +       + L +L PL  + ++  L+  +  S IA   L+  F++  
Sbjct: 125 IAPSLGLSSPMFLRRQTWIVFALFVLTPLSFLKRLDSLRHTSVISLIALCYLV--FIVLY 182

Query: 156 YYIFGDEIN-----FTDKRISGDLSRLPAFLSTVIFAMEGIGVVMPVENTMKKPQHFLGC 210
           ++I GD +      F  +   G LS LP F+           V+  V N     Q F+  
Sbjct: 183 HFIIGDTVKGEIRYFVPESGFGYLSVLPVFVFGFTCHQNAFSVINEVRNFS---QGFVNF 239

Query: 211 PSVLVVAMSTIMLMYSILGLFGYFRYGDVLRGSI 244
                +  ST  L+Y ++ + GY  +G +  G+I
Sbjct: 240 TMFTAIISST--LLYLLVAITGYLSFGSLASGNI 271


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 140 SFIANILLIATFVICMYYIFGDEINFTDKRI-SGDLSRLPAFLS-TVIFAMEGIGVVMPV 197
           S I +++ I +  + MY ++     FT  R+   +   +P++    VIF  E +GV   +
Sbjct: 460 SSIGSVISILSLFLFMYVMYDQ---FTSNRVVKTNPYLIPSYFDDNVIFVNEKLGVAQSI 516

Query: 198 ENTMKKPQH 206
           E  +  P H
Sbjct: 517 EWLLHSPVH 525


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 2/19 (10%)

Query: 13  GIIGT--IVIAFVCGHCVH 29
           GI+GT  +++ F CG CVH
Sbjct: 819 GIVGTEGLLVCFKCGTCVH 837


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 92  VLIADSLKQLFDEYVTTTVLPVEYYCLIILVPLCLMVQIRHLKWLAPFSFIANILLIATF 151
           ++I  SLK L D  V      V  + L     +C  +  R+ +W   F F+ N L  A  
Sbjct: 269 MVIIQSLKHLPDTTVDAAFGLVSLFILFFTKYMCQYLGKRYPRWQQAF-FLTNTLRSAVV 327

Query: 152 VI 153
           VI
Sbjct: 328 VI 329


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 60  GPKSLRPFA---FAAQLFSEFALFFTYIGVCCIFTVL 93
           G  SL+ F+   FA Q FS   + +T+I   C+ T+L
Sbjct: 266 GDSSLKSFSLHFFALQFFSTSLIQYTHICRKCVITIL 302


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 187 AMEGIGVVMPVE---NTMKKPQHFLGCPSVLVVAMSTIMLMYSIL 228
           A++ +G+++  E     MK PQ    C   L V  +T +LMY +L
Sbjct: 201 AIKNLGILLKKEFRVRHMKTPQQINDCDCGLHVCENTRILMYRLL 245


>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 145 ILLIATFVICMYYIFGDEINFTDKRISGDLSR---LPAFLSTVIFAMEGIG-VVMP 196
           +LL A F   +Y++FG E+  T      D+     LP F +    +M G+G +VMP
Sbjct: 140 LLLGALFFYDIYFVFGTEVMVT-VATGIDIPAKYVLPQFKNPTRLSMLGLGDIVMP 194


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 212 SVLVVAMSTIMLMYSILGLFGYFRYGDVLRGSITL 246
           SVL V + T +L +  LG  G   YG  LR ++ +
Sbjct: 238 SVLNVVLGTSLLWFGWLGFNGGSAYGSNLRAAMAI 272


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.333    0.146    0.469 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,097,044
Number of Sequences: 5004
Number of extensions: 43316
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 10
length of query: 253
length of database: 2,362,478
effective HSP length: 71
effective length of query: 182
effective length of database: 2,007,194
effective search space: 365309308
effective search space used: 365309308
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.5 bits)
S2: 53 (25.4 bits)