Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001150-TA|BGIBMGA001150-PA|IPR013057|Amino acid
transporter, transmembrane
         (252 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    34   0.001
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   6.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.2  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
          protein.
          Length = 232

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 7/67 (10%)

Query: 36 RYPAFISTVIFAMEGIGVV-------MPVENSMKKPQNFLGFPSVLVVAMSTIVFLYSTL 88
          +Y  FI   +FA+ G+G++       + +    K+ +  L FPS+ ++ + +I+F+ S  
Sbjct: 9  KYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQIETGLAFPSITLIVLGSIIFVISFF 68

Query: 89 GLFGYFR 95
          G  G  R
Sbjct: 69 GCCGAIR 75


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 119 KIFIALSIFFTYPLQFYVVIDIFTKYTKHHIKENYQKMAQVVARTVGV 166
           +IF+A    F+Y +   ++I  +++   H +  N++K  +  A+ + V
Sbjct: 209 RIFVATIFTFSYCIPMILIIYYYSQIVSHVV--NHEKALREQAKKMNV 254


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 94  FRYGDVLRGTITLNLPTEEWPAIF 117
           +RYGD +         TE W  +F
Sbjct: 221 YRYGDAIPTVPYTETETETWTRVF 244


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 150 KENYQKMAQVVART 163
           KENYQ M++  ART
Sbjct: 405 KENYQTMSRDPART 418


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 150 KENYQKMAQVVART 163
           KENYQ M++  ART
Sbjct: 405 KENYQTMSRDPART 418


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.330    0.146    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,105
Number of Sequences: 429
Number of extensions: 2531
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 252
length of database: 140,377
effective HSP length: 56
effective length of query: 196
effective length of database: 116,353
effective search space: 22805188
effective search space used: 22805188
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 43 (21.4 bits)