GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001150-TA|BGIBMGA001150-PA|IPR013057|Amino acid
transporter, transmembrane
         (252 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    68   2e-12
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    43   5e-05
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    28   1.1  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   6.0  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    25   8.0  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 15  LYYIFGGGISFVDKKVAG----DPARYPAFISTVIFAMEGIGVVMPVENSMKKPQNFLGF 70
           LY  F   I+   K +A     +   +  FI   IF  EGI +++P++  M KP+N    
Sbjct: 431 LYLYFWDVITLATKGIADVAMFNKTDFSLFIGVAIFTYEGICLILPIQEQMAKPKN---L 487

Query: 71  PSVLVVAMSTIVFLYSTLGLFGYFRYGDVLRGTITLNLPTEEWPAIFAKIFIALSIFFTY 130
           P +L   M+ I  L+ ++GL  Y  +G  ++  + LN+P   +  I   ++ A++I  + 
Sbjct: 488 PKLLTGVMAAISLLFISIGLLSYAAFGSKVKTVVILNMPESTFTVIIQFLY-AIAILLST 546

Query: 131 PLQFYVVI-----DIFTKYTKHHIKENYQK 155
           PLQ +  I      IFT+  K + K  ++K
Sbjct: 547 PLQLFPAIAIIEQGIFTRSGKRNRKIKWRK 576


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 14/180 (7%)

Query: 25  FVDKKVAGDPARYPAFISTVIFAMEGIGVVMPVENSMKKPQNFLGFPSVLVVAMSTIVFL 84
           FV +   G  +  P F+           V+  V N     Q F+ F     +  ST+  L
Sbjct: 197 FVPESGFGYLSVLPVFVFGFTCHQNAFSVINEVRNFS---QGFVNFTMFTAIISSTL--L 251

Query: 85  YSTLGLFGYFRYGDVLRGTITLNLPTEEWPAIFAKIFIALSIFFTYPLQFY-----VVID 139
           Y  + + GY  +G +  G I           I  K+ I + + F+YPLQ +     V   
Sbjct: 252 YLLVAITGYLSFGSLASGNIIAMYDNTSIWIIGGKLAIVVLVLFSYPLQCHPCRNSVYQA 311

Query: 140 IFTKYTKHHIKENYQKMAQVVARTVGVTCCVGIGIALPLLEQIINIVGAIFYSILGLVIP 199
           I   Y+ H + + Y  +  +      +     + + L  LE ++  VG+   + +  ++P
Sbjct: 312 IRRSYSAHDMSDGYHAVITLCI----LLFTHSLALLLSSLEMVLAFVGSTGSTFISFILP 367


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/52 (25%), Positives = 29/52 (55%)

Query: 152 NYQKMAQVVARTVGVTCCVGIGIALPLLEQIINIVGAIFYSILGLVIPAIVE 203
           +Y ++ +V+A+++     V +G+A  LL  I   +   F    G+V+P++ +
Sbjct: 353 DYSELLRVIAKSLKDANVVVVGVAALLLTHIAKALRKGFLPYTGIVLPSLFD 404


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 51  IGVVMPVENSMKKPQNFLGFPS 72
           +  V P++   +KP N  GFPS
Sbjct: 131 LSTVTPIKQDHQKPMNLQGFPS 152


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 17/173 (9%)

Query: 58  ENSMKKP--QNFLGFPSVLVVAMSTIVFLYSTLGLFGYFRYGDVLRGTITLNLPTEEWPA 115
           +NS   P  + FL F S+ V+ +  + +L     LF  +   + +   +        W A
Sbjct: 94  DNSSTSPLKKAFLSFISIFVLNVPAVCYLTYKDALFKDYGKDEWVYFAV--------WCA 145

Query: 116 IFAKIFIALSIFFTYPLQFYVVIDIFTKYTKHHIKENYQKMAQVVARTVGVTCCVGIGIA 175
               IFI+L  F+   ++   V  IF       IK     +AQ V +   ++    + + 
Sbjct: 146 SCLMIFISLWYFYETWIKAVKVTVIFLAQC---IKVTVVFLAQCV-KVTSISLAKCVKLT 201

Query: 176 LPLLEQIINIVGAIFYSILGLVIPAIVETVFRWNDLGKFKWILWKNVLILLFG 228
              L Q + +  A+F +    VI   +  + R  ++    W+LW  +  +LFG
Sbjct: 202 AVFLAQCVKVT-AVFLAQCVKVISIGLFNIRR--EMMIIIWLLWLIICCILFG 251


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.330    0.146    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,089,599
Number of Sequences: 5004
Number of extensions: 45383
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 5
length of query: 252
length of database: 2,362,478
effective HSP length: 71
effective length of query: 181
effective length of database: 2,007,194
effective search space: 363302114
effective search space used: 363302114
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 53 (25.4 bits)