Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001150-TA|BGIBMGA001150-PA|IPR013057|Amino acid
transporter, transmembrane
(252 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43964| Best HMM Match : Aa_trans (HMM E-Value=9.2e-05) 106 2e-23
SB_43965| Best HMM Match : Aa_trans (HMM E-Value=7.5e-08) 96 2e-20
SB_42789| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 2e-14
SB_42790| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 7e-14
SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 9e-12
SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31) 62 3e-10
SB_17613| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 7e-10
SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_43974| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_42788| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 9e-04
SB_2577| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.074
SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07) 33 0.30
SB_31832| Best HMM Match : FtsX (HMM E-Value=2.8) 31 0.69
SB_53892| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_14385| Best HMM Match : ANF_receptor (HMM E-Value=6.5e-35) 30 1.6
SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17) 29 4.9
SB_34639| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-25) 29 4.9
>SB_43964| Best HMM Match : Aa_trans (HMM E-Value=9.2e-05)
Length = 332
Score = 106 bits (254), Expect = 2e-23
Identities = 63/194 (32%), Positives = 107/194 (55%), Gaps = 6/194 (3%)
Query: 53 VVMPVENSMKKPQNFLGFPSVLVVAMSTIVFLYSTLGLFGYFRYGDVLRGTITLNLPTEE 112
+V+PVEN M+ P++F VL +AMS +V LY +G GY + +G+ TLNLP
Sbjct: 134 LVLPVENMMRTPRDFTW---VLNLAMSVVVILYLVVGTMGYISCAAMCKGSFTLNLPDTP 190
Query: 113 WPAIFAKIFIALSIFFTYPLQFYVVIDIFTKYTKHHIKENYQKMAQVVARTVGVTCCVGI 172
+ K+ IA S+F TY LQFYV ++I + + YQ +A + RT V V +
Sbjct: 191 FYTTL-KLLIAGSMFLTYFLQFYVPVEILLPSVLKRVSKKYQTVADLGFRTSLVLVTVVL 249
Query: 173 GIALPLLEQIINIVGAIFYSILGLVIPAIVETVFRWNDLGKFKW-ILWKNVLILLFGLGS 231
+P LE +I ++G++ + L + PA ++ + K W +L K+++I+L G+
Sbjct: 250 AACVPRLEDVIAVIGSLASTTLCMTFPAAMD-IASLRMSSKLTWYLLLKDIVIILIGITG 308
Query: 232 LVSGCTVTIMDIIQ 245
V+G +++ +I+
Sbjct: 309 SVTGLYMSMAKLIR 322
>SB_43965| Best HMM Match : Aa_trans (HMM E-Value=7.5e-08)
Length = 373
Score = 96.3 bits (229), Expect = 2e-20
Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 11/173 (6%)
Query: 38 PAFISTVIFAMEGIGVVMPVENSMKKPQNFLGFPSVLVVAMSTIVFLYSTLGLFGYFRYG 97
P V+F EGIGV++PVEN M P+ F VL MS + LY +G+ GY G
Sbjct: 195 PLAFGAVVFTYEGIGVILPVENMMAIPRRFRW---VLYAGMSLVTLLYLLMGVLGYLSCG 251
Query: 98 DVLRGTITLNLPTEEWPAIFAKIFIALSIFFTYPLQFYVVIDIFTKYTKHHIKENYQKMA 157
+G+ITLNLP + + K+ IA SIF TY +QFYV+ I + K +++ +
Sbjct: 252 TSCQGSITLNLPNTPF-YMSVKLIIAASIFLTYFIQFYVITSILFPFVKGRVRQTIAPLV 310
Query: 158 QVVARTVGV----TCCVGIGIA-LPLLEQIINIVGAIFYSILG--LVIPAIVE 203
+ R + V T C ++ L L++ I IV +F S++G + ++VE
Sbjct: 311 DIAFRMLLVCFTATFCYDKSLSTLSLIKDIGIIVIGVFGSVIGFYFTLKSVVE 363
>SB_42789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 507
Score = 76.2 bits (179), Expect = 2e-14
Identities = 67/255 (26%), Positives = 115/255 (45%), Gaps = 11/255 (4%)
Query: 1 MIANVLLVATYAICLYY-IFGGGISFVDKKVAGDPARYPAFISTVIFAMEGIGVVMPVEN 59
MIA + L+++ A+ L Y I ++ D +P V F+ V +E
Sbjct: 252 MIAVLALMSSIAVTLAYCILNYDRWSINNIPTFDGNTFPIGFGIVTFSYCAHAVFPGIEA 311
Query: 60 SMKKPQNFLGFPSVLVVAMSTIVFLYSTLGLFGYFRYGDVLRGTITLNLPTEEWPAIFAK 119
SMK P+N+ + +T+ L+ G F +G V +T+NL A
Sbjct: 312 SMKHPENYNKMMHTSFLVSATVKTLF---GAFAVLTFGLVTDQVVTVNLADSLAFNTAAT 368
Query: 120 IFIALSIFFTYPLQFYVVIDIFTKYTKHHI-----KENYQKMAQVVARTVGVTCCVGIGI 174
F+AL++FF++PL +VVI+ F H + NY + ++ RT+ VT + I +
Sbjct: 369 AFVALNVFFSFPLPLFVVIETFDGLLLPHFPYVGRESNYHWVWLLITRTLLVTFALFISL 428
Query: 175 ALPLLEQIINIVGAIFYSILGLVIPAIVETVFRWNDLGKFKWILWKNVLILLFGLGSLVS 234
+P ++ +G+ + L P I +W L ++ IL + VLI +FG+ + V
Sbjct: 429 IVPHFGLLMGFIGSFTGTCLSFCFPCIAHLKLKWKYL-RWYHILGELVLI-VFGVVAGVF 486
Query: 235 GCTVTIMDIIQVLKQ 249
G + +I KQ
Sbjct: 487 GFIYSGKALIDSFKQ 501
>SB_42790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 74.5 bits (175), Expect = 7e-14
Identities = 57/245 (23%), Positives = 115/245 (46%), Gaps = 18/245 (7%)
Query: 4 NVLLVATYAICLYYIFGGGIS-FVDKKVAGDPA----RYPAFISTVIFAMEGIGVVMPVE 58
++L V + CL+ I G + + K+ P +P I ++F+ G V +E
Sbjct: 301 SMLAVLSLITCLFIIIGYSLQEWQSWKIHNIPDFDINNFPVAIGIIVFSYCGHSVFPGIE 360
Query: 59 NSMKKPQNFLGFPSVLVVAMSTIVFLYSTLGLFGYFRYGDVLRGTITLNLPTEEWPAI-- 116
+SM+KP+ F + + +++ +GL YG ITLN+ +E +
Sbjct: 361 SSMRKPRKF---KKIACTSFTSVTLCKVAIGLLCCLLYGPHTLPLITLNIQSEAKNVVMR 417
Query: 117 -FAKIFIALSIFFTYPLQFYVV---IDIFTKYTKHHIKENYQKMA--QVVARTVGVTCCV 170
F +FI ++ +F++PL +V +D+ N K A +++ RT V
Sbjct: 418 SFMAVFIIVNTYFSFPLNIFVASETLDLIALPKLPSCSVNKLKRAIWKLLTRTTLVLSTC 477
Query: 171 GIGIALPLLEQIINIVGAIFYSILGLVIPAIVETVFRWNDLGKFKWILWKNVLILLFGLG 230
GI +A+P L +++I G++ + + ++P + + + L ++ +L VL+++FG
Sbjct: 478 GIAVAIPHLGLLMSIFGSLLGACISFILPCALHLTLKRDQLRCYQVVL--EVLVIIFGFS 535
Query: 231 SLVSG 235
+ + G
Sbjct: 536 AGMLG 540
>SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 67.7 bits (158), Expect = 9e-12
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 3/143 (2%)
Query: 2 IANVLLVATYAICLYYIFGGGISFVDKKVAGDPARYPAFISTVIFAMEGIGVVMPVENSM 61
I+N+ L+ + L Y+ G +++ + +P F V A +GIG ++P+E+SM
Sbjct: 549 ISNLALLFAFLAVLGYMLTGWTFKLNEIRLFSWSTFPVFFGQVTSAYQGIGTLIPIESSM 608
Query: 62 KKPQNFLGFPSVLVVAMSTIVFLYSTLGLFGYFRYGDVLRGTITLNLPTEEWPAIFAKIF 121
+N +P L +A+ + + G+ GY YG+ + +T LP + +I
Sbjct: 609 A--ENRHRYPLYLHLALGLLSAILGGFGITGYLVYGENVDQIVTSELPQGLLVTV-VQIL 665
Query: 122 IALSIFFTYPLQFYVVIDIFTKY 144
+ L+I FTYPLQ + V +I Y
Sbjct: 666 LCLAILFTYPLQLFPVTEIIESY 688
>SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)
Length = 974
Score = 62.5 bits (145), Expect = 3e-10
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 3/153 (1%)
Query: 2 IANVLLVATYAICLYYIFGGGISFVDKKVAGDPARYPAFISTVIFAMEGIGVVMPVENSM 61
+AN+ L+A + L I G ++ + +P F + A EGIG ++P+E+ M
Sbjct: 605 LANIALLAGFFGLLVQILDGLHFKLNDVTLANWITFPIFFGQLTCAYEGIGCIIPIESGM 664
Query: 62 KKPQNFLGFPSVLVVAMSTIVFLYSTLGLFGYFRYGDVLRGTITLNLPTEEWPAIFAKIF 121
N FP L + ++ + L + G+ G+ YG+ + +T L T + A ++
Sbjct: 665 --GSNRPRFPLYLHLTLAQLSVLLGSFGVLGFLIYGNDVPQIVTDKLTTGLF-AQLVRVT 721
Query: 122 IALSIFFTYPLQFYVVIDIFTKYTKHHIKENYQ 154
+ +++ FTYPLQ + VI I I+ ++
Sbjct: 722 LIIAVLFTYPLQLFPVIQIAESLVFEKIRRKHK 754
>SB_17613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1004
Score = 61.3 bits (142), Expect = 7e-10
Identities = 41/200 (20%), Positives = 89/200 (44%), Gaps = 8/200 (4%)
Query: 31 AGDPARYPAFISTVIFAMEGIGVVMPVENSMKKPQNFLGFPSVLVVAMSTIVFLYSTLGL 90
A D ++P ++F+ V VE SM+ P+ + P ++ VA + ++LGL
Sbjct: 597 AFDFTKFPVGFGIIVFSYTAHAVFPGVEASMRNPRMY---PQMMNVAFVVAAIVKTSLGL 653
Query: 91 FGYFRYGDVLRGTITLNLPTEEWPAIFAKIFIALSIFFTYPLQFYVVIDI----FTKYTK 146
+G + +T+N+ + F+ +++ F++P+ +V+ + F ++
Sbjct: 654 LTVMVFGTTTQQAVTVNIKNSTVVNYLSNGFVIINVLFSFPINLFVITETLDSKFLRFFP 713
Query: 147 HHIKEN-YQKMAQVVARTVGVTCCVGIGIALPLLEQIINIVGAIFYSILGLVIPAIVETV 205
H + + Y Q + RT+ +T + + + +P + VG+ + L V+P
Sbjct: 714 HMDRSSEYNWAWQGLTRTLVLTLALVLVLIVPHFALFVGFVGSFTGTCLCFVLPCYFNIK 773
Query: 206 FRWNDLGKFKWILWKNVLIL 225
+W L + L V++L
Sbjct: 774 LKWQSLRWYDIALRWMVIVL 793
>SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 35 ARYPAFISTVIFAMEGIGVVMPVENSMKKPQNFLGFPSVLVVAMSTIVFLYSTLGLFGYF 94
A P F V+F EGIGVV+P+EN M +PQ+ F VL V M I+ ++ +G+ GY
Sbjct: 176 AALPLFFGMVVFTFEGIGVVLPLENQMARPQH---FRLVLNVGMGIILAIFYLMGVLGYL 232
Query: 95 RY 96
+
Sbjct: 233 AF 234
Score = 49.6 bits (113), Expect = 2e-06
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 122 IALSIFFTYPLQFYVV----IDIFTKYTKHHIKENYQKMAQVVART--VGVTCCVGIGIA 175
I L+IF+ + Y+ ++I + + E + +A RT V VTC + +GI
Sbjct: 218 IILAIFYLMGVLGYLAFLRPMEIMQPPIRQCVGERFHGIADYGFRTLLVCVTCALALGI- 276
Query: 176 LPLLEQIINIVGAIFYSILGLVIPAIVETVFRWNDLGKFKWILWKNVLILLFGLGSLVSG 235
P L I++VG+I S L LV P + + ++ ++ K+V IL FGL V G
Sbjct: 277 -PQLSNFISLVGSIGSSALALVFPITIHLLTLYSTHQLTISVIIKDVFILAFGLLGSVVG 335
Query: 236 CTVTIMDIIQVLK 248
+I++I++V +
Sbjct: 336 LYTSILNIVRVYR 348
>SB_43974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 43.2 bits (97), Expect = 2e-04
Identities = 49/249 (19%), Positives = 106/249 (42%), Gaps = 16/249 (6%)
Query: 6 LLVATYAICLYYIFGGGISFV-DKKVAG--DPARYPAFISTVIFAMEGIGVVMPVENSMK 62
++ T A+ + +G ISF D K + P ++ +IF+ V+ +E +M
Sbjct: 765 VVALTIAVSIILGYGFSISFSWDIKFIPFWETKGAPLALAIIIFSYICHPVLPGIEANMA 824
Query: 63 KPQNFLGFPSVLVVAMSTIVFLYSTLGLFGYFRYGDVLRGTITLNLPTEEWPAIFAKIFI 122
P F ++L ++ +++ + + + + + IT +LP + I IF+
Sbjct: 825 DPNKF---NTMLALSYASVFLVKIVFSMCAFLSFSTHISEVITNSLPLG-YLKISVNIFL 880
Query: 123 ALSIFFTYPLQFYVVIDIFTKYTKHHIKENYQKMAQVVARTVGVTCCVGI-GIALPLLEQ 181
LSI +YP + +I + + + + + + V I +++P
Sbjct: 881 LLSIVLSYPFRVMTIIQVLESVIPDSLISKFPSIVWFIFVRIFVNFLTLIPAVSIPRFAL 940
Query: 182 IINIVGAIFYSILGLVIPAIVETVFRWNDLGKFKWILWKNVLILLFG-----LGSLVSG- 235
+ G++ + + + P I + +L + +L ++ I++FG LG L +G
Sbjct: 941 FMAFAGSLTGTCMSFLFPCIFHLALKAPELSNWSKLL--DISIIVFGVVAGLLGILATGD 998
Query: 236 CTVTIMDII 244
VT +DI+
Sbjct: 999 PDVTTIDIM 1007
>SB_42788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 41.1 bits (92), Expect = 9e-04
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 33 DPARYPAFISTVIFAMEGIGVVMPVENSMKKPQNFLGFPSVLVVAMSTIVFLYSTLGLFG 92
+P+ +P ++F+ V VE SM+ PQ F P ++ + + F LGL
Sbjct: 293 EPSTFPIGFGIIVFSYCAHAVFPGVEGSMQDPQKF---PLMMNTSFTLAAFNKVLLGLLA 349
Query: 93 YFRYGDVLRGTITLNLPTEE 112
R+GD +T+N+ ++E
Sbjct: 350 VLRFGDQTEQVVTVNMGSKE 369
>SB_2577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 703
Score = 39.5 bits (88), Expect = 0.003
Identities = 39/207 (18%), Positives = 82/207 (39%), Gaps = 16/207 (7%)
Query: 36 RYPAFISTVIFAMEGIGVVMPVENSMKKPQNFLGFPSVLVVAMSTIVFLYSTLGLFGYFR 95
++ A + V+ + + +E SM++P NF +V +A + F+ G GY
Sbjct: 153 KFGAAVGIVVVSYSSQPYMPAIEGSMQRPHNFNNVMNVTYIA---VTFVKVFFGFIGYLT 209
Query: 96 YGDVLRGTITLNLPTEEWPAIFAKIFIALSIFFTYPLQFYVVIDIFTKYT------KHHI 149
+ IT NLP E + + + +Y + Y V DI + +H
Sbjct: 210 FTRDTDQVITNNLP-EGVLHMVVNLLVLFLAATSYTIPVYTVFDILENISFPCGRMEHPS 268
Query: 150 ----KENYQKMAQVVARTVGVTCCVGIGIALPLLEQIINIVGAIFYSILGLVIPAIVETV 205
K+ + AR ++ + +G+ +P + +VG+ L + PA
Sbjct: 269 SAKGKDKLSYFQALTARLCVISFTLLVGVLVPHFGLYMALVGSFTGMCLAFIFPAFFHMK 328
Query: 206 FRWNDLGKFKWILWKNVLILLFGLGSL 232
+ + + + + + + +FG+G +
Sbjct: 329 ICYQRMQWYGFFI--DSFVAIFGIGGV 353
>SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 34.7 bits (76), Expect = 0.074
Identities = 45/202 (22%), Positives = 80/202 (39%), Gaps = 18/202 (8%)
Query: 57 VENSMKKPQNFLGFPSVLVVAMSTIVFLYSTLGLFGYFRYGDVLRGTITLNLPTEEWPAI 116
+E SMK P F + ++ I + Y G+ YF +G +TL+LP +
Sbjct: 229 IERSMKYPAEFNAMMNFTYTLVTIIKYNY---GILVYFAFGKHTEQLMTLSLPLGPFRTA 285
Query: 117 FAKIFIALSIFFTYPLQFYVVIDIF---------TKYTKHHIKENYQKMAQVVARTVGVT 167
+ I ++ F Y + + + DIF K +K ++V R V
Sbjct: 286 LDFLVIITALLF-YVVPMFTLYDIFENQLDIPLLRKVGDQPLKCYNGCTPKLVFRFGFVV 344
Query: 168 CCVGIGIALPLLEQIINIVGAIFYSILGLVIPAIVETVFRWNDLGKFKWILWKNVLILLF 227
+ + I +P ++ VG SIL + P + L + L +V I++F
Sbjct: 345 VSMVVAIFVPHFGLLMAFVGGFTGSILVYIFPCMFHVKLHHKTLPWYYIAL--DVAIIVF 402
Query: 228 GLGSLVSGCTVTIMDIIQVLKQ 249
G + + G + IQ+ K+
Sbjct: 403 GAVACLCG---VVFSGIQIAKE 421
>SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07)
Length = 956
Score = 32.7 bits (71), Expect = 0.30
Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 55 MPVENSMKKPQNFLGFPSVLVVAMSTIVFLYSTLGLFGYFRYGDVLRGTITLNLPTEEWP 114
+ V +K+P F V +AM YS FG+ +G + I +N + +
Sbjct: 481 LSVYTELKRP-TVPRFGIVCTIAMVLCCTAYSVTACFGFLTFGAKCKSDILMNYSSNDVM 539
Query: 115 AIFAKIFIALSIFFTYPLQFY----VVIDIFT---KYTKHHIKENYQKMAQVVARTVGVT 167
A++ IAL + T+ + V ++ + T + + N +K +VV + V
Sbjct: 540 VNIARVAIALVVISTFASVHFSGRSAVEGLWLTAWRMTLYEAEINARK-RRVVQTVLWVG 598
Query: 168 CCVGIGIALPLLEQIINIVGAI 189
+ I +A+ + +I+I+G +
Sbjct: 599 FTLFIAVAVSDISYVISIIGGL 620
>SB_31832| Best HMM Match : FtsX (HMM E-Value=2.8)
Length = 186
Score = 31.5 bits (68), Expect = 0.69
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 162 RTVGVTCCVGIGIALPLLEQIINIVGAIFYSILGLVIPAIVETVFRWNDLGKFKWILWKN 221
R V V V I + +P ++ I+G+I L LV P + + + ++++ N
Sbjct: 98 RAVFVVLTVAIAVFVPEFSLLMAIIGSISGVFLTLVFPPLFYIILHLEHISSKQYVV--N 155
Query: 222 VLILLFGLGSLVSGCTVTIMDIIQV 246
+LI+ G+ S G +++ +++V
Sbjct: 156 ILIVCVGVLSGGFGLVFSVIALMKV 180
>SB_53892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 31.1 bits (67), Expect = 0.91
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 81 IVFLYSTLGLFGYFRYGDVLRG 102
+V L + LG+ GY +YGDV RG
Sbjct: 158 VVTLNNRLGVLGYLKYGDVFRG 179
>SB_14385| Best HMM Match : ANF_receptor (HMM E-Value=6.5e-35)
Length = 1003
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 36 RYPAFISTVIFAMEGIGVVMPVENSMKKPQNFL-GFPSVL-------VVAMSTIVFLYST 87
R+ T F GIGVVM ENS K FL F S L V+ M + +L+S
Sbjct: 447 RWKVIDFTQPFMTSGIGVVMGTENSPKPYFRFLEPFKSDLWITIFGAVLGMGVVNWLFSV 506
Query: 88 LGLFGYF 94
+ FG++
Sbjct: 507 VSPFGFY 513
>SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 29.5 bits (63), Expect = 2.8
Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 10/158 (6%)
Query: 52 GVVMPVENSMKKPQNFLGFPSVLVVAMSTIVFLYSTLGLFGYFRYGDVLRGTITLNLPTE 111
GV++ + S Q +G +V+++ +S +V +TL + G+V G +
Sbjct: 39 GVMLYLRLSWVVGQAGIGLATVIIM-LSAVVTTVTTLSMSAICTNGEVKGGGAYYLISRS 97
Query: 112 EWPAIFAKIFIALSIFFTYPLQFYVVIDIFTKYTKHHIKENYQKMAQVV--ARTVG-VTC 168
P I I SI + YVV F + + +KEN + V R +G +T
Sbjct: 98 LGPEFGGSIGIIFSIASAVAVAMYVV--GFAETVRDLLKENGALIVDEVNDVRIIGLITI 155
Query: 169 CVGIGIALPLLEQIIN----IVGAIFYSILGLVIPAIV 202
+ +AL L+ ++ ++ + SIL ++I +
Sbjct: 156 VFILAVALVGLKWVVRTQVILLAVLIISILDVIIGTFI 193
>SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1205
Score = 29.1 bits (62), Expect = 3.7
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 123 ALSIFFTYP-LQFYVVIDIFTKYTKHHIKENYQKMAQVVARTVGVTCCV-----GIGIAL 176
+L + T P Y + +Y K + ++ + A V R +GV CV G I L
Sbjct: 1053 SLIVAMTEPRASLYSETILVEEYAKQIVNLDFDQDALPVERALGVQWCVESDLLGFRITL 1112
Query: 177 ---PLLEQ-IINIVGAIFYSILGLVIPAIVETVFRWNDLGKFKWILW 219
P+ + I++ V ++ Y LGL+ P I+ + DL K + W
Sbjct: 1113 SDKPMTRRGILSTVSSV-YDPLGLLAPYILPAKKLFQDLSKLNNLGW 1158
>SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)
Length = 655
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 134 FYVVIDIFTKYTKHHIKENYQKMAQVVARTVGVTCCVGIGIALPLLEQIINI-----VGA 188
F ++++ YT ++ +++ ++ + CCV G+ + L +II I
Sbjct: 387 FCLIVNWIAYYTS---RQRQRRLLHIIGIICLIICCVAFGLGVAGLSEIICISLVLLTKF 443
Query: 189 IFYSILGLVIPA 200
I Y+++GLV+ A
Sbjct: 444 IAYTLMGLVLSA 455
>SB_34639| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-25)
Length = 941
Score = 28.7 bits (61), Expect = 4.9
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 143 KYTKHHIKENYQKMAQVVARTVGVTCCV-----GIGIAL---PLLEQ-IINIVGAIFYSI 193
+Y K + ++ + A V R +GV CV G I L P+ + I++ V ++ Y
Sbjct: 399 EYAKQIVNLDFDQDALPVERALGVQWCVESDLLGFRITLSDKPMTRRGILSTVSSV-YDP 457
Query: 194 LGLVIPAIVETVFRWNDLGKFKWILW 219
LGL+ P I+ + DL K + W
Sbjct: 458 LGLLAPYILPAKKLFQDLSKLNNLGW 483
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.330 0.146 0.447
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,388,005
Number of Sequences: 59808
Number of extensions: 279283
Number of successful extensions: 717
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 25
length of query: 252
length of database: 16,821,457
effective HSP length: 80
effective length of query: 172
effective length of database: 12,036,817
effective search space: 2070332524
effective search space used: 2070332524
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 59 (27.9 bits)
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