Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001149-TA|BGIBMGA001149-PA|IPR003534|Major royal jelly
protein
         (514 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   2.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   2.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   2.9  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    23   5.1  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    23   6.7  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   6.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   6.7  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 153 DLNTDQIIRKYVLRPEDIVSTTFIANIALDIGTSCEDTFAYFSDELGYGLI 203
           +LN ++ +RKY+ + ED     +  N   + G    D +     +  Y  I
Sbjct: 324 NLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNKLADLYKSLGPDSVYSFI 374


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 153 DLNTDQIIRKYVLRPEDIVSTTFIANIALDIGTSCEDTFAYFSDELGYGLI 203
           +LN ++ +RKY+ + ED     +  N   + G    D +     +  Y  I
Sbjct: 216 NLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNKLADLYKSLGPDSVYSFI 266


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 402 PLPVLQAQQILKPLQPIKALSRAKLYNHGLGVTATPFSEAVAVYTPGS 449
           P P     QI +P+  +  L+    YN  +  T     E ++V  P S
Sbjct: 340 PTPSQSPNQIYQPVTNLTNLTYPSYYNQDVSCTHYQNPEYISVVNPES 387


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 354 KIDDEKNVWVMSDRMAVFLEAELDYSDINFR 384
           K D+  N W+  D+  +F+  ELD   +N +
Sbjct: 507 KTDERGNPWLFRDQKIMFI--ELDKFTVNLK 535


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 103 EGNELGNCQTGLTTVYRVKADQCDRLWVLDV 133
           + NE  +  T L   Y  + +Q   LWVL V
Sbjct: 6   DANETDSNNTSLDAFYFFETEQFTLLWVLFV 36


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 255 GYRTLYFSPLSSHTEFSVSTRILRDETKVKGSYKDFSVVG 294
           GY  + F+ +   T     TR+  D+ KV   YKD   +G
Sbjct: 290 GYGVMGFNEICEFT--GDWTRVFDDQQKVPYKYKDDQWIG 327


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 318 IDQNAVGCWRSSLPYKPQNIGIADKDDVGLV 348
           +D+  +GC R+ + Y P   GI    +V ++
Sbjct: 308 MDKTELGCLRAIILYNPDVRGIKSVQEVEML 338


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,146
Number of Sequences: 317
Number of extensions: 6156
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 9
length of query: 514
length of database: 114,650
effective HSP length: 60
effective length of query: 454
effective length of database: 95,630
effective search space: 43416020
effective search space used: 43416020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)