Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001149-TA|BGIBMGA001149-PA|IPR003534|Major royal jelly
protein
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    29   2.0  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    28   2.7  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   4.7  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    27   6.2  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   8.3  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    27   8.3  

>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 131 LDVGTYGYDNVTNVCPYTLNVFDLNTD--QIIRKYVLRPEDIVSTTF-IANIALDIGT 185
           L+ G +G D V  VCP+  N+F +  D    I KY+  P+ +  + + IA   L I T
Sbjct: 451 LNSGAFGLDEVFQVCPFKSNIFYVLKDVPWSITKYL--PQALQHSGYLIAEDTLQINT 506


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/61 (27%), Positives = 28/61 (45%)

Query: 436 TPFSEAVAVYTPGSTKSGLTGSYRQPIIKNTAPKVQNYIYIPKQTSSAYTSGQFTRPKST 495
           +P   + A  TP  ++SG + + R+     T   +QN +Y    T+S   SG     K +
Sbjct: 138 SPSGASSARQTPAPSRSGASTAGRRRTSATTRGAIQNGVYHSPYTASLADSGSTRGQKVS 197

Query: 496 N 496
           N
Sbjct: 198 N 198


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 434 TATPFSEAVAVYTPGSTKSGLTGSYRQPIIKNTAPKVQNYIYIPKQTSSAYTS 486
           +ATP     ++ T  S++S +  SY  PI  N+     +   I    SS+YTS
Sbjct: 785 SATPTITQSSISTSVSSQSSMNSSYSSPISSNSV--TSSTSIISSIASSSYTS 835


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 269 EFSVSTRILRDETKVKGSYKDFSVVGVRGPDG 300
           EFSV+  I   +T++K  Y DF+ + ++ P+G
Sbjct: 11  EFSVNKGIFT-KTRLKSLYSDFTSLFIKNPEG 41


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 28  NVVDWNYPDQFSKQQALRT-GALIPENALPVGIERW-RNKLFV 68
           +++ WN P QF  +Q L     L P   L + +ER  R K+FV
Sbjct: 74  DLIQWNDPSQFDNEQFLNALAVLFPR--LSIEVERHVRLKIFV 114


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 408 AQQILKPLQPIKALSRAKLYNHGLGVTAT 436
           A++I + LQ  KA S    Y+H  G+T+T
Sbjct: 96  ARRIAESLQSTKATSSRTSYDHSEGITST 124


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,243
Number of Sequences: 5004
Number of extensions: 116686
Number of successful extensions: 226
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 6
length of query: 514
length of database: 2,362,478
effective HSP length: 76
effective length of query: 438
effective length of database: 1,982,174
effective search space: 868192212
effective search space used: 868192212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)