Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001149-TA|BGIBMGA001149-PA|IPR003534|Major royal jelly
protein
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.42 
SB_40103| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.73 
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.2  
SB_34765| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.1  
SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   5.1  
SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_52008| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.0  
SB_40441| Best HMM Match : DUF1531 (HMM E-Value=4.3)                   29   9.0  
SB_31374| Best HMM Match : hATC (HMM E-Value=0.38)                     29   9.0  
SB_30945| Best HMM Match : hATC (HMM E-Value=0.38)                     29   9.0  
SB_30944| Best HMM Match : FlaG (HMM E-Value=1.2)                      29   9.0  
SB_9103| Best HMM Match : Herpes_UL31 (HMM E-Value=4)                  29   9.0  
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)                    29   9.0  

>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 33.5 bits (73), Expect = 0.42
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 217 HSYFMPDPLVGDFNIAGLNFQWGAEGIFGITASPIGADGYRTLYFSPLSSHTEFSVSTRI 276
           + Y    P   +F    LN  +G E +   +   +  D    +Y +P  S   F++S  +
Sbjct: 168 YPYITMSPTHEEFENGLLNVIYGFE-LAAASFKSLVRDKELAVYTTPPGSDVVFALSRDV 226

Query: 277 LRDETKVKGSYKDFSVVGVRGPDGHT----TAKVMDDSGVQLFNLIDQNAVGCWRSSLPY 332
             +E   K  + D  ++     D  +    T +++ D    + N    +A+GCW SS  +
Sbjct: 227 EEEEKAQKVPWPDTELLFGEDADYQSDVSHTIQLVKDEADSVLNYAKASAIGCWASSPCH 286

Query: 333 KPQ 335
           + Q
Sbjct: 287 RGQ 289


>SB_40103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 32.7 bits (71), Expect = 0.73
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 445 YTPGSTKSGLTGSYRQPIIKNTAPKVQNYI---YIPKQTSSAYTSGQFTRPKSTNKNPWW 501
           Y P  T SG+T     P + +T+  +++Y    Y P  TSS  T+G  T P+  + N  W
Sbjct: 183 YAPSPTSSGITTGTATPRVNSTS-IIRHYYWHRYAPSPTSSGITTGTAT-PRVNSTNIIW 240

Query: 502 N 502
           +
Sbjct: 241 H 241



 Score = 30.7 bits (66), Expect = 2.9
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 445 YTPGSTKSGLTGSYRQPIIKNTAPKVQNYI---YIPKQTSSAYTSGQFT-RPKSTN--KN 498
           Y P  T SG+T     P + N+   +++Y    Y P  TSS  T+G  T R  ST+  ++
Sbjct: 151 YAPSPTSSGITTGTATPRV-NSTNIIRHYYWHRYAPSPTSSGITTGTATPRVNSTSIIRH 209

Query: 499 PWWNK 503
            +W++
Sbjct: 210 YYWHR 214


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 15/112 (13%)

Query: 388 APLDTLIQGTVCEAPLPVLQAQQILKPLQPIKALSRAKLYNHGLGVTATPFSEAVAVYTP 447
           APL  L    V  +PL VL   Q+  PLQ +  L    LY       ++P  ++ ++Y  
Sbjct: 545 APLQVLTPLQVSLSPLQVLTPLQVSTPLQVLIPLQVLPLYKSSALYKSSPLYKSSSLY-- 602

Query: 448 GSTKSGLTGSYRQPIIKNTAPKVQNYIYIPKQTSSAYTSGQFTRPKSTNKNP 499
              KS        P+ K++ P   + +Y   ++SS Y S    +  S  ++P
Sbjct: 603 ---KS-------SPLYKSSPPYKSSSLY---KSSSLYKSSSLYKSSSLYESP 641


>SB_34765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 41  QQALRTGALIPE---NALPVGIERWRNKLFVS---VPRWRSGIPATLNYIPLDAPYEPSP 94
           +  L  G+  PE   N     +E+W N+  +    +P++ +  P     +P+  P EP+P
Sbjct: 57  EATLLDGSKSPEQKANETIEAVEKWENQPEMESTPLPKYYTSPPEDERPLPITLPSEPAP 116

Query: 95  KLTPYP 100
            L  YP
Sbjct: 117 TLEHYP 122


>SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1513

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 21/83 (25%), Positives = 31/83 (37%)

Query: 417 PIKALSRAKLYNHGLGVTATPFSEAVAVYTPGSTKSGLTGSYRQPIIKNTAPKVQNYIYI 476
           P   L R   Y+        P+  A   ++ G  ++G+T SYRQ       P        
Sbjct: 202 PPTPLRRHASYDTTEKYQVVPYKLARTTFSGGDVQNGITPSYRQRQENGGVPGAPQNTSS 261

Query: 477 PKQTSSAYTSGQFTRPKSTNKNP 499
           PK       S + T P  T+ +P
Sbjct: 262 PKIALQKTPSTKVTPPSPTHISP 284


>SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 48 ALIPENALPVGIERWRNKLFVSVPRWRSGIPATLNYIP 85
          ALIP       +E  R K+  S+PR R  I  +LN IP
Sbjct: 18 ALIPGGVKSTLLENLREKVDKSIPRDRHSIAESLNQIP 55


>SB_52008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 250 PIGADGYRTLYFSPLSSHTEFSVSTRILRDETKVKGSYKDFSVVGVRGPD 299
           P   D YRT+YFS L      +++ R  +   KV    ++F +  VRG D
Sbjct: 313 PAAEDRYRTMYFSALDD-IVMAITERFDQKGFKVYRIVEEFLLKAVRGVD 361


>SB_40441| Best HMM Match : DUF1531 (HMM E-Value=4.3)
          Length = 406

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 250 PIGADGYRTLYFSPLSSHTEFSVSTRILRDETKVKGSYKDFSVVGVRGPD 299
           P   D YRT+YFS L      +++ R  +   KV    ++F +  VRG D
Sbjct: 269 PAAEDRYRTMYFSALDD-IVMAITERFDQKGFKVYRIVEEFLLKAVRGVD 317


>SB_31374| Best HMM Match : hATC (HMM E-Value=0.38)
          Length = 245

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 250 PIGADGYRTLYFSPLSSHTEFSVSTRILRDETKVKGSYKDFSVVGVRGPD 299
           P   D YRT+YFS L      +++ R  +   KV    ++F +  VRG D
Sbjct: 50  PAAEDRYRTMYFSALDD-IVMAITERFDQKGFKVYRIVEEFLLKAVRGVD 98


>SB_30945| Best HMM Match : hATC (HMM E-Value=0.38)
          Length = 282

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 250 PIGADGYRTLYFSPLSSHTEFSVSTRILRDETKVKGSYKDFSVVGVRGPD 299
           P   D YRT+YFS L      +++ R  +   KV    ++F +  VRG D
Sbjct: 86  PAAEDRYRTMYFSALDD-IVMAITERFDQKGFKVYRIVEEFLLKAVRGVD 134


>SB_30944| Best HMM Match : FlaG (HMM E-Value=1.2)
          Length = 922

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 250 PIGADGYRTLYFSPLSSHTEFSVSTRILRDETKVKGSYKDFSVVGVRGPD 299
           P   D YRT+YFS L      +++ R  +   KV    ++F +  VRG D
Sbjct: 738 PAAEDRYRTMYFSALDD-IVMAITERFDQKGFKVYRIVEEFLLKAVRGVD 786


>SB_9103| Best HMM Match : Herpes_UL31 (HMM E-Value=4)
          Length = 551

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 250 PIGADGYRTLYFSPLSSHTEFSVSTRILRDETKVKGSYKDFSVVGVRGPD 299
           P   D YRT+YFS L      +++ R  +   KV    ++F +  VRG D
Sbjct: 492 PAAEDRYRTMYFSALDD-IVMAITERFDQKGFKVYRIVEEFLLKAVRGVD 540


>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
          Length = 430

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 93  SPKLTPYPSFEGNELGNCQTGLTTVYRVKADQCDRL-----WVLDVGTYGYDNVTNVCPY 147
           +PK +  P+ EGN  G C +   T   V+ ++C R      W      Y  D     CP 
Sbjct: 233 NPKTSCMPTHEGNSNGACCSFPFTYKGVEQNRCIRTERNFRWCATTNNYDNDKDWGFCPL 292

Query: 148 TL--NVFDLNTDQIIRKYVLRPEDIVSTTFIANIALDIGTSCEDTFAYFS 195
               NV  +     ++   +    +    ++ N+ + + T C   + + S
Sbjct: 293 CACRNVHSVRVLLCVQCVGVVMSSVRGCRYVHNVRVSLCTLCAFRYVHSS 342


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.136    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,148,686
Number of Sequences: 59808
Number of extensions: 803924
Number of successful extensions: 1596
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1580
Number of HSP's gapped (non-prelim): 24
length of query: 514
length of database: 16,821,457
effective HSP length: 85
effective length of query: 429
effective length of database: 11,737,777
effective search space: 5035506333
effective search space used: 5035506333
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)