Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001149-TA|BGIBMGA001149-PA|IPR003534|Major royal jelly
protein
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687... 33 0.72
01_05_0618 + 23723441-23723465,23724733-23724788,23725108-237253... 33 0.72
01_01_0596 + 4435643-4436664,4437241-4437766 33 0.72
05_07_0311 - 29139883-29140359,29140641-29140788,29140883-291409... 31 2.2
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 2.2
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 31 2.9
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 30 3.8
12_02_0008 + 12239759-12239923,12240404-12240443,12241278-122414... 29 6.7
10_08_0028 - 14262607-14262783,14262886-14262932,14263014-142632... 29 6.7
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845 29 8.9
09_02_0556 + 10637362-10637575,10637728-10637825 29 8.9
>11_06_0233 +
21565233-21566053,21566840-21567890,21568075-21568758,
21568927-21569019,21571815-21571835
Length = 889
Score = 32.7 bits (71), Expect = 0.72
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 102 FEGNELGNCQTGLTTVYRVKADQCDR---LWVLDVGTYGYDNVTNVCPYTLNVFDLNTDQ 158
F EL + Q L V +V+ DQ D+ +W DV YD N+ + L++ D+ ++
Sbjct: 35 FLKTELESIQAALEKVSKVQLDQLDKQIKIWARDVRELSYDIEDNIDTFMLHINDIEPNK 94
>01_05_0618 +
23723441-23723465,23724733-23724788,23725108-23725372,
23725623-23725759,23725849-23725943,23726033-23727057,
23727293-23727453,23727816-23727892,23727978-23728125,
23728364-23728441,23728611-23728838
Length = 764
Score = 32.7 bits (71), Expect = 0.72
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 193 YFSDELGYGLIAYSWEQNKSWRFSHSYFMPDPLVGDFNIAGLNFQWGAEGIFGITASPIG 252
Y +E G I + + + +H Y +PLVGDF +A +W +G G+ IG
Sbjct: 559 YLHEECRVGCIIHRDMRPNNILVTHDY---EPLVGDFGLA----RWQPDGDMGVDTRVIG 611
Query: 253 ADGYRTLYFSPLSSHTE 269
GY ++ TE
Sbjct: 612 TFGYLAPEYAQSGQITE 628
>01_01_0596 + 4435643-4436664,4437241-4437766
Length = 515
Score = 32.7 bits (71), Expect = 0.72
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 87 DAPY--EPSPKLTPYPSFEGNELGNCQTGLTTVYRVKADQCDR--LWVLDVGTYGYDNVT 142
DAP +P L YP G ++ + RVK D+ +W+LD GT+ ++ V
Sbjct: 205 DAPQVNDPYHNLIHYPHQHGKLNCLVESPAGDLMRVKRQSNDKFVVWILDKGTFSWEKVD 264
Query: 143 NVCPYTLNV 151
N+ + L V
Sbjct: 265 NIGDFALFV 273
>05_07_0311 -
29139883-29140359,29140641-29140788,29140883-29140959,
29141227-29141387,29141785-29142803,29142905-29142996,
29143117-29143256,29143397-29143574
Length = 763
Score = 31.1 bits (67), Expect = 2.2
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 193 YFSDELGYGLIAYSWEQNKSWRFSHSYFMPDPLVGDFNIAGLNFQWGAEGIFGITASPIG 252
Y +E G I + + + +H + +PLVGDF +A +W +G G+ IG
Sbjct: 501 YLHEECRVGCIIHRDMRPNNILVTHDF---EPLVGDFGLA----RWQPDGDMGVETRVIG 553
Query: 253 ADGYRTLYFSPLSSHTE 269
GY ++ TE
Sbjct: 554 TFGYLAPEYAQSGQITE 570
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 31.1 bits (67), Expect = 2.2
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 434 TATPFSEAVAVYTPGSTKSGLTGSYRQPIIKNTAPKVQNYIYIPKQTSSAYTSGQFT-RP 492
T+ +S VY+P S T S P + P +Y Y P S + TS ++ P
Sbjct: 1665 TSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYSYSP 1724
Query: 493 KSTNKNPWWNKATNYNYEVFEP 514
S + +P + +YNY P
Sbjct: 1725 TSPSYSP---TSPSYNYSPTSP 1743
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 30.7 bits (66), Expect = 2.9
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 101 SFEGNELGNCQTGLTTVYRVKADQCD---RLWVLDVGTYGYDNVTNVCPYTLNVFDL 154
+F +EL + Q + + +V DQ D ++W DV YD NV + L V DL
Sbjct: 27 TFLNSELESMQAEVDKISKVPLDQLDSQIKIWARDVRELSYDIEDNVDTFMLCVDDL 83
>10_01_0307 +
3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 30.3 bits (65), Expect = 3.8
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 269 EFSVSTRILRDETKVKGSYKDFSVVGVRGPDGHTTAKVMDDSGVQLFNLIDQNAVG-CWR 327
+F R++RDE G Y FSVV + D +K+ + + V+ LI AV C
Sbjct: 299 DFESLLRMVRDEVPFSGGYSTFSVVDILEMDVE-VSKLPEFAAVESGPLILAWAVFLCLV 357
Query: 328 SSLPYKPQNIG 338
SLP N+G
Sbjct: 358 MSLPGSNTNLG 368
>12_02_0008 +
12239759-12239923,12240404-12240443,12241278-12241435,
12242400-12242462,12243149-12243268,12243388-12243684,
12245012-12245335,12246411-12246680
Length = 478
Score = 29.5 bits (63), Expect = 6.7
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 431 LGVTATPFSEAVAVYT-PGSTKSGLTGSYRQPIIKNTAPKVQNYIYIPKQTSSAYTSGQF 489
LG P + A Y G K T + P NT V+N +Y P Q SA + GQ
Sbjct: 176 LGYPMRPNEKECAYYLRTGQCKFASTCKFHHPQPSNTMVAVRNSMYSPGQ--SATSPGQH 233
Query: 490 TRP 492
T P
Sbjct: 234 TYP 236
>10_08_0028 -
14262607-14262783,14262886-14262932,14263014-14263281,
14263374-14263486,14264362-14264400,14264531-14264591,
14264685-14264834
Length = 284
Score = 29.5 bits (63), Expect = 6.7
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 10 GLVSLASATIKLQEIFSWNVVDWNYPDQFSKQQALRTGALIPENAL-PVGIERWRNKLFV 68
G +S A + L I+ W ++ G ++ E L P + W K+
Sbjct: 37 GFISDAEQSQLLHHIYQAPAPKWK---SLKNRRLQNWGGVVHEKGLLPQALPSWLTKITD 93
Query: 69 SVPRWRSGIPATLNYIPLDAPYEPSPKLTPY 99
+ +W P+ +N++ ++ Y P+ + P+
Sbjct: 94 RICQWTGLFPSAINHVLIN-EYHPNQGIMPH 123
>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
Length = 958
Score = 29.1 bits (62), Expect = 8.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 106 ELGNCQTGLTTVYRVKADQCD---RLWVLDVGTYGYDNVTNVCPYTLNV 151
EL + Q L V +V DQ D ++W D+ YD N+ + L V
Sbjct: 48 ELKSIQAALEKVSKVPLDQLDEQTKIWAWDIRELSYDMEDNIDTFMLRV 96
>09_02_0556 + 10637362-10637575,10637728-10637825
Length = 103
Score = 29.1 bits (62), Expect = 8.9
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 51 PENALPVGIERWRNKLFVSVPRWRSGIPATLNYIPLDAPYEPSPKLTPYPSFEGNELGNC 110
P + LP +R VS R R PATL PL P PS P + G G+C
Sbjct: 17 PPSPLPSTADRSSTPSAVS-GRHRRRAPATLAVPPL--PRSPSLSSVPVEARRGGRRGDC 73
Query: 111 QTGLTTVYRVKAD 123
+++ D
Sbjct: 74 TASFISIHGADVD 86
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.423
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,558,628
Number of Sequences: 37544
Number of extensions: 699621
Number of successful extensions: 1356
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1355
Number of HSP's gapped (non-prelim): 12
length of query: 514
length of database: 14,793,348
effective HSP length: 85
effective length of query: 429
effective length of database: 11,602,108
effective search space: 4977304332
effective search space used: 4977304332
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -