GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001149-TA|BGIBMGA001149-PA|IPR003534|Major royal jelly
protein
         (514 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-12|CAB01666.2|  397|Caenorhabditis elegans Hypothetical p...    32   1.1  
Z78411-5|CAB01647.2|  397|Caenorhabditis elegans Hypothetical pr...    32   1.1  
Z81475-3|CAB03909.1|  303|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical pr...    29   7.8  

>Z78413-12|CAB01666.2|  397|Caenorhabditis elegans Hypothetical
           protein F02D8.4 protein.
          Length = 397

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 205 YSWEQNKSWRFSHSYFMPDPLVGDFNIAGLNFQWGAEGIFGITASPIGADGYRTLYFSPL 264
           YS   ++ WR + S F      G        F WG +G+     S I   G R     P 
Sbjct: 170 YSRTNDRMWRKTRSRFTNSRCAGADANRNYPFYWGTQGVSHSQCSEIFC-GSR-----PQ 223

Query: 265 SSHTEFSVSTRILRDETKVKG 285
           S     +++  I+RDE ++KG
Sbjct: 224 SEPEVLALTNAIIRDEERIKG 244


>Z78411-5|CAB01647.2|  397|Caenorhabditis elegans Hypothetical
           protein F02D8.4 protein.
          Length = 397

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 205 YSWEQNKSWRFSHSYFMPDPLVGDFNIAGLNFQWGAEGIFGITASPIGADGYRTLYFSPL 264
           YS   ++ WR + S F      G        F WG +G+     S I   G R     P 
Sbjct: 170 YSRTNDRMWRKTRSRFTNSRCAGADANRNYPFYWGTQGVSHSQCSEIFC-GSR-----PQ 223

Query: 265 SSHTEFSVSTRILRDETKVKG 285
           S     +++  I+RDE ++KG
Sbjct: 224 SEPEVLALTNAIIRDEERIKG 244


>Z81475-3|CAB03909.1|  303|Caenorhabditis elegans Hypothetical
           protein C24H11.3 protein.
          Length = 303

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 466 TAPKVQNYIYIPKQTSSAYTSGQFTRPKSTNKNPWWNKATNYNYEV 511
           T P +   I +P+QT   Y +  F  P+  N  P +  A NYN+EV
Sbjct: 220 TPPTISPQIDLPQQTPY-YFNQNFVAPQ--NYQPQFASAQNYNFEV 262


>Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical
           protein T28C6.7 protein.
          Length = 459

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 75  SGIPATLNYIPLDAPYEPSPKLTPYPSFEG 104
           S    T +  PLD P++PS KL+  P  +G
Sbjct: 126 SSSSGTFSPPPLDPPFDPSSKLSALPDIDG 155


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.136    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,449,554
Number of Sequences: 27539
Number of extensions: 612402
Number of successful extensions: 1139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1136
Number of HSP's gapped (non-prelim): 4
length of query: 514
length of database: 12,573,161
effective HSP length: 85
effective length of query: 429
effective length of database: 10,232,346
effective search space: 4389676434
effective search space used: 4389676434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)