Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001148-TA|BGIBMGA001148-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
(239 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 28 1.4
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 27 2.4
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 27 2.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.6
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 5.6
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 25 7.4
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 25 7.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 7.4
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa... 25 7.4
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 9.8
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 25 9.8
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 25 9.8
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 25 9.8
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 17 VSSGYPSNTLNKSSLEKRNVAIAPAPE 43
+SSGYP ++ L+ RNV + PE
Sbjct: 234 LSSGYPQQHFSQPELQNRNVHLETVPE 260
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 155 QENRENIPSNNSVQPMTSI-DMDDGFFYGSGSPCSEKADSPAPSECSSGVSSAYSAVDRY 213
+ N + PSN+ + ++ ++ GF S +P +EK + SE S + SA D +
Sbjct: 464 KSNSQQAPSNHVLSKSNTVPNLVTGFPTRSDNPPNEKRRRTSSSENSRALDIQLSASDSH 523
Query: 214 EVTTQQQMGSMD 225
++ + S++
Sbjct: 524 SPNSKSTLKSVE 535
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 46 YVTHDTPPNLHYRKKVHFRTNPYT 69
+VTH TP LH+ ++ T YT
Sbjct: 846 WVTHTTPVLLHHNERAELATEAYT 869
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 160 NIPSNNSVQPMTSIDMDDGFFYGSGSPCSE-KADSPAPSECSSGVSSAYSAV 210
++PS++SVQP +S + + SP S S SE SS + S SA+
Sbjct: 469 SVPSSSSVQPQSSTPISSS--SSASSPQSTLSTSSEVVSEVSSTLLSGSSAI 518
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.8 bits (54), Expect = 5.6
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 134 YIRYLQQLLDESDAALGITRDQENRENIPSNNSVQPMTSIDMDDGFFYGSGSPCSEKADS 193
Y+ L D+A R N++ S+ + + I+ +G GSP SE DS
Sbjct: 80 YLHSDTNFLSNFDSAYERVRRLLNQQGGKSSLQKKEVEQIETQEGGDNAKGSPSSENKDS 139
Query: 194 PAPSECSSGVSSAYSAVDR-YEVTTQQQMGSMDEEELLD 231
S + +A+ + E Q S + + LD
Sbjct: 140 DRNSRLQQLIEKKRNALKKEQEDLIQNSATSHSKSDNLD 178
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 157 NRENIPSNNSVQPMTSIDMDDGFFYGSGSPCSEK 190
+R + NS + D + G F+GSG SEK
Sbjct: 30 SRRRLAEENSDEENEEFDEEGGRFFGSGLKKSEK 63
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 7.4
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 137 YLQQLLDESDAALGITRDQENRENIPSNNSVQPMTSIDMDDGFFYGSGSPCSEKADSPAP 196
YL + A+ +T D N S NS ++ M + GSGS S + S +
Sbjct: 460 YLSAAGSSATNAISLTADS----NAVSRNS----SASTMSTSYTSGSGSSNSSGSSSNSS 511
Query: 197 SECSSGVSS 205
S+ SSG SS
Sbjct: 512 SKSSSGASS 520
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 183 SGSPCSEKADSPAPSECSSGVSSAYSAVDRYEVTTQQQMGSMDEE 227
S SP S S AP+ S VS + S +R+E +T + S E
Sbjct: 1264 SPSPTSSSMASAAPARTS--VSRSKSKAERHETSTSSRKSSKSGE 1306
>SPCC1259.07 |||transcriptional regulatory protein Rxt3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 150 GITRDQENRENIPSNNSVQPMTSIDMDDGFFYGSGSPCSEKADSPAPSECSSGVSSAYSA 209
G++ +EN ++ ++ P S ++ + G+P + ADS + S +S++ S
Sbjct: 100 GVSDQEENTSSVKRQKTL-PTQSSGEEEAKYSHPGAPTATSADSISMESRPSNLSTSLSK 158
Query: 210 VDRY 213
Y
Sbjct: 159 TTSY 162
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.0 bits (52), Expect = 9.8
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 21 YPSNTLN---KSSLEKRNVAIAPAPEKNYVTHDTPPNLHYRKKVHFRTNPYTGPQAASIA 77
+PSN+ N KSS N+ I P+P +N V P R + R+ +G + + +
Sbjct: 506 FPSNSQNSPSKSSNLSINIDIPPSPLQNTVISPQPTR---RSRTPIRS--LSGRSSVASS 560
Query: 78 RRNARERN 85
R ++R R+
Sbjct: 561 RNSSRTRS 568
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 154 DQENRENIPSNNSVQPMTSIDMDDGFFYGSGSPCSEK 190
+ ++ E+ N V SIDM++ G+G+P E+
Sbjct: 18 ETDSMESGQQQNMVSSTPSIDMNESDCSGTGTPSEER 54
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 159 ENIPSNNSVQPMTSIDMDDGFFYGSGSPCSEKADSPAPSE 198
EN+ SNN Q ++ D F + SE++ P+ S+
Sbjct: 462 ENLSSNNKPQEYVGVENDYNFSNNPPTAMSEQSFHPSVSQ 501
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 153 RDQENRENIPSNNSVQPMTSIDMDDGFFYGSGSPCSEKADSP 194
R Q+N +N N+ P T I FYG+ + + A P
Sbjct: 127 RQQQNEQN----NASAPRTGISTSTNSFYGNNAAATAPAPPP 164
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.127 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,067,170
Number of Sequences: 5004
Number of extensions: 44712
Number of successful extensions: 114
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 15
length of query: 239
length of database: 2,362,478
effective HSP length: 71
effective length of query: 168
effective length of database: 2,007,194
effective search space: 337208592
effective search space used: 337208592
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)
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