GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001148-TA|BGIBMGA001148-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (239 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117...    31   0.83 
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427...    29   2.5  
01_01_0336 + 2712412-2712576,2713663-2713738,2713840-2713898,271...    29   2.5  
10_07_0134 + 13289641-13290216,13290435-13290914                       29   4.4  
01_03_0055 + 12074512-12076155                                         28   5.8  
05_01_0015 + 117238-117996                                             28   7.7  
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127...    28   7.7  

>05_05_0202 -
          23211342-23211385,23211493-23211579,23211666-23211779,
          23211886-23212111,23212222-23212401,23212511-23212654,
          23212818-23212979,23213093-23213296,23214109-23214156,
          23214601-23214846
          Length = 484

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 28 KSSLEKRNVAIAPAPEKNYVTHDTPPNLHYRKKVHFRTNPYTGPQAASIARRNA 81
          +SSL     A APAPE  +      P   Y         PY GP+A  I+R+ A
Sbjct: 21 QSSLSAAAAAAAPAPENAFAAAPKMPPFDYTPP------PYDGPRAEEISRKRA 68


>03_06_0609 -
           35042276-35042388,35042476-35042527,35042624-35042725,
           35043546-35043745,35045258-35045336,35045541-35045595,
           35045947-35046122,35046386-35046988,35047077-35047265,
           35048150-35048201,35048289-35048356,35048873-35048911,
           35048912-35048970,35049639-35049782,35050136-35050238,
           35050368-35050467,35050596-35050612
          Length = 716

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 17  VSSGYPSNTLNKSSLEKRNVAIAPAPEKNYVTHDTPPNLHYRKKVHFRTNPYTGPQAASI 76
           +SSGYP   LN+S+L K  ++         V        + R+    +T  +  PQ+A I
Sbjct: 227 ISSGYPPEELNRSNLVKLELSDGQTLYSKLVVGADGSKSNVRQTAGIKTTGWNYPQSAII 286


>01_01_0336 +
           2712412-2712576,2713663-2713738,2713840-2713898,
           2714009-2714148,2714690-2714745,2714832-2714908,
           2715007-2715075
          Length = 213

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 147 AALGITR--DQENRENIPS---NNSVQPMTSIDMDDGFFYG-SGSPCSEKADSPAPSECS 200
           A L + R  D  N++ I     +  V P T  ++D+G FYG  GS  ++   +     C 
Sbjct: 45  AGLSLLRELDSVNKDQIAKWILSFQVHPKTDNELDNGQFYGFCGSRTTQFPSTNMKDPCH 104

Query: 201 SG--VSSAYSAVDRYEVTTQQQMGSMDEEELLDVISWWQQ 238
           +G  ++S YSA+   ++     + ++D + LL  +   QQ
Sbjct: 105 NGSHLASTYSALAILKI-VGYDLANIDNKVLLSSMRNLQQ 143


>10_07_0134 + 13289641-13290216,13290435-13290914
          Length = 351

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 71  PQAASIARRNARERNRVKQVNDGFNALRRHLPAS 104
           P+  +I  +N R R + KQ+   F+ALRR L A+
Sbjct: 142 PRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAA 175


>01_03_0055 + 12074512-12076155
          Length = 547

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 142 LDESDAALGITRDQENRENIPSNNSVQPMTSIDMDDGFFYGSG 184
           L   D++ G   D+++ E++PS+N V      D DD    G G
Sbjct: 305 LGMKDSSAGPEDDEDDSEDVPSSNEVDDEDDDDDDDDDEVGPG 347


>05_01_0015 + 117238-117996
          Length = 252

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 145 SDAALGITRDQENRENIPSNNSVQPMTSIDMDDGFFYGSGSPCSEKADSPAPSEC 199
           S AA  ITR + N +  PS++S+  +T          GSG     KA +  P  C
Sbjct: 187 SSAAGSITRKRSNHQEEPSSSSLVNVTPSKRKQR--QGSGGKIRPKAATTTPKPC 239


>02_01_0190 +
           1276808-1278214,1278450-1278743,1278815-1279087,
           1279204-1279336,1279425-1279551,1279788-1280284,
           1280578-1280642,1280722-1280823,1281020-1281162,
           1281761-1281816,1282214-1282869,1282975-1283165,
           1283280-1283574,1283738-1283778,1284082-1284104,
           1284173-1284369,1284472-1284581,1285309-1285639,
           1285968-1286060,1286095-1286166,1286626-1286886
          Length = 1788

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 182 GSGSPCSEKADSPAPSECSSGVSSAYSAVDRYEVTTQQQMGSMDEE 227
           GSGS  SE+  S   SE  +GV+   +A    +V+ +   GS DEE
Sbjct: 181 GSGSEVSEEFPSAGNSE--AGVAEKTNAEGNADVSKEATSGSGDEE 224


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.127    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,702,175
Number of Sequences: 37544
Number of extensions: 279174
Number of successful extensions: 656
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 652
Number of HSP's gapped (non-prelim): 8
length of query: 239
length of database: 14,793,348
effective HSP length: 80
effective length of query: 159
effective length of database: 11,789,828
effective search space: 1874582652
effective search space used: 1874582652
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)