Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001148-TA|BGIBMGA001148-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
(239 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32910| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_43185| Best HMM Match : HLH (HMM E-Value=4e-20) 56 3e-08
SB_27345| Best HMM Match : HLH (HMM E-Value=1.2e-20) 56 3e-08
SB_535| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_52528| Best HMM Match : HLH (HMM E-Value=3.9e-18) 40 0.001
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_56922| Best HMM Match : HLH (HMM E-Value=1.9e-21) 35 0.069
SB_37377| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_12347| Best HMM Match : HLH (HMM E-Value=3.8e-21) 33 0.21
SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_35548| Best HMM Match : BPL_LipA_LipB (HMM E-Value=1.5e-27) 31 0.64
SB_17080| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 30 1.5
SB_47522| Best HMM Match : HLH (HMM E-Value=1e-17) 30 2.0
SB_30517| Best HMM Match : HLH (HMM E-Value=6.9e-15) 30 2.0
SB_47523| Best HMM Match : HLH (HMM E-Value=1.1e-18) 29 2.6
SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20) 29 2.6
SB_20446| Best HMM Match : HLH (HMM E-Value=1.26117e-44) 29 2.6
SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11) 29 2.6
SB_34658| Best HMM Match : SUI1 (HMM E-Value=1e-06) 29 3.4
SB_6246| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_12345| Best HMM Match : HLH (HMM E-Value=1.4e-12) 28 6.0
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023) 28 7.9
>SB_32910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 12/76 (15%)
Query: 72 QAASIARRNARERNRVKQVNDGFNALRRHLPASXXXXXXXXXXXXXXXXXXXXXDTLRMV 131
+ +++ARRN RERNRV+ VNDGF++LR+H+P +TLR
Sbjct: 68 EPSAVARRNERERNRVRLVNDGFSSLRQHIP------------YFPEKKKLSKVETLRCA 115
Query: 132 VEYIRYLQQLLDESDA 147
V YI++LQ L++E DA
Sbjct: 116 VAYIKHLQSLIEEYDA 131
>SB_43185| Best HMM Match : HLH (HMM E-Value=4e-20)
Length = 232
Score = 55.6 bits (128), Expect = 3e-08
Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Query: 22 PSNTLNKSSLEKRNVAIAPAPEKNYVTHDTPPNLHYRKKVHFRTNPYTGPQAASIARRNA 81
P++++ +SL + + A P + TP R++ T P A +ARRNA
Sbjct: 15 PASSIRYTSLSEDDSAEV-RPATKFAMVPTPVLGQTRRRRAVSTAKQKEP--AVVARRNA 71
Query: 82 RERNRVKQVNDGFNALRRHLPASXXXXXXXXXXXXXXXXXXXXXDTLRMVVEYIRYLQQL 141
RER RVK VNDGF LR+H+P TLR +EYIR+LQ L
Sbjct: 72 RERKRVKLVNDGFMRLRKHVPTD------------PKNKKLSKVKTLRSAIEYIRHLQHL 119
Query: 142 LDESD 146
L +++
Sbjct: 120 LGQAN 124
>SB_27345| Best HMM Match : HLH (HMM E-Value=1.2e-20)
Length = 153
Score = 55.6 bits (128), Expect = 3e-08
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 12/72 (16%)
Query: 75 SIARRNARERNRVKQVNDGFNALRRHLPASXXXXXXXXXXXXXXXXXXXXXDTLRMVVEY 134
S+ RRN RERNRVK V+DGF ALR+H+P + +TLR +EY
Sbjct: 72 SVLRRNERERNRVKLVSDGFAALRKHIPTT------------PVNKKLSKVETLRTAIEY 119
Query: 135 IRYLQQLLDESD 146
I++LQ++L++S+
Sbjct: 120 IKHLQRILNDSN 131
>SB_535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 42.7 bits (96), Expect = 3e-04
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Query: 72 QAASIARRNARERNRVKQVNDGFNALRRHLPASXXXXXXXXXXXXXXXXXXXXXDTLRMV 131
+ A I +RN RER RV+ VN+G+ LR HLP +TLR
Sbjct: 51 EPAFIRKRNERERIRVRHVNEGYARLREHLPEE------------PSDKRMSKVETLRAA 98
Query: 132 VEYIRYLQQLLDESDAALGITRDQENRENIPSNNS 166
+ YI++L+ LL +++AA G + ++ + N S
Sbjct: 99 IRYIKHLESLL-QAEAA-GSSEGNKSDSSCEGNKS 131
>SB_52528| Best HMM Match : HLH (HMM E-Value=3.9e-18)
Length = 138
Score = 40.3 bits (90), Expect = 0.001
Identities = 44/136 (32%), Positives = 54/136 (39%), Gaps = 24/136 (17%)
Query: 59 KKVHFRTNPYTGPQAASIARR--NARERNRVKQVNDGFNALRRHLPASXXXXXXXXXXXX 116
++ RT TG S RR N RERNRV+QVN F LR +P
Sbjct: 21 RRARRRTRRLTG---VSKQRRTANERERNRVQQVNAAFETLRNKIP------------LR 65
Query: 117 XXXXXXXXXDTLRMVVEYIRYLQQLLDESDAALGITRDQENRENIPSNNSVQPMTSIDMD 176
DT+R+ YI+ L QLL ++ IT SN SV T D
Sbjct: 66 ALEKKPSKIDTIRLATRYIQDLTQLLSLAETEGRITSPSS------SNGSVYSSTIAD-H 118
Query: 177 DGFFYGSGSPCSEKAD 192
DG Y S + K D
Sbjct: 119 DGSLYSSTTDQDGKTD 134
>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 37.1 bits (82), Expect = 0.013
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 11/109 (10%)
Query: 58 RKKVHFRTNPYTGPQAASIARRNARERNRVKQVNDGFNALRRHLPASXXXXXXXXXXXXX 117
RKK R P + NARERNR++ ++D LR HLP +
Sbjct: 21 RKKRRRRRRPRLTGLSKQRQTANARERNRMRSISDALLHLRYHLPQT----------VVA 70
Query: 118 XXXXXXXXDTLRMVVEYIRYLQQLLDESDA-ALGITRDQENRENIPSNN 165
TLR+ + YI L ++L D + I+ Q E + N+
Sbjct: 71 KDKKLSKIQTLRLAIRYISDLFEILQSDDGQGINISNGQLCAEYLDGND 119
>SB_56922| Best HMM Match : HLH (HMM E-Value=1.9e-21)
Length = 157
Score = 34.7 bits (76), Expect = 0.069
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 80 NARERNRVKQVNDGFNALRRHLPASXXXXXXXXXXXXXXXXXXXXXDTLRMVVEYIRYLQ 139
N +ER R + +N F LR H+P TLR+ + YIRYL
Sbjct: 37 NRKERKRTQTMNTAFEDLRNHIP------------NVPPDTKLSKIKTLRLAISYIRYLM 84
Query: 140 QLLDES 145
+L+ES
Sbjct: 85 DILEES 90
>SB_37377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Query: 80 NARERNRVKQVNDGFNALRRHLPASXXXXXXXXXXXXXXXXXXXXXDTLRMVVEYIRYLQ 139
N RER R++ +N+ F LR+H+P DTLR+ + YI +L
Sbjct: 49 NLRERKRMQSINEAFEGLRKHIP------------TLPYEKRLSKVDTLRLAIGYIGFLT 96
Query: 140 QLLD 143
++++
Sbjct: 97 EMIN 100
>SB_12347| Best HMM Match : HLH (HMM E-Value=3.8e-21)
Length = 143
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 80 NARERNRVKQVNDGFNALRRHLP 102
NARERNR VN FNALR +P
Sbjct: 56 NARERNRTHSVNAAFNALRLLIP 78
>SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2431
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 143 DESDAALGITRDQENRENIPSNNSVQPMTSIDMDDGFFYGSGSPCSEKADSPAPS 197
DE + AL + Q N+ S S PMT + DD + S S KA + A S
Sbjct: 924 DEQEGALEVQSAQVQAANLLSQPSEDPMTDDEYDDDDRFSFTSATSSKASADAES 978
>SB_35548| Best HMM Match : BPL_LipA_LipB (HMM E-Value=1.5e-27)
Length = 378
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 78 RRNARERNRVKQVNDGFNALRRHLPASXXXXXXXXXXXXXXXXXXXXXDTLRMVVEYIRY 137
RRNARER R ++N F+ LR +P +TLR+ YI
Sbjct: 297 RRNARERERQGRLNSAFDVLRGVIP--------DYLSGKGPERKLTQIETLRLATHYIMA 348
Query: 138 LQQLLDESD 146
L ++L++ +
Sbjct: 349 LSEMLEDEN 357
>SB_17080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 31.1 bits (67), Expect = 0.85
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 52 PPNLHYRKKVHFRTNPYTGPQAASIARRNARERNRVKQVNDGFNALRRHLP 102
P NL K++ ++P + +++ N +ER RV+++N+ F LRR LP
Sbjct: 2 PTNL---KRLTSSSSPPSPTESSKRLEANKKERMRVQKMNNAFQDLRRVLP 49
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 172 SIDMDDGFFYGSGSPCSEKADSPAPSECSSGVSSAYSAVDRYEVTTQQQMGSMDEE 227
++ +DD F G P +++ P + SG+ A VD + T +++ M EE
Sbjct: 5 TVILDDPFDDPEGLPIPDRSPEPTKEQLESGLIGADEEVDETKGKTMEEIEDMIEE 60
>SB_47522| Best HMM Match : HLH (HMM E-Value=1e-17)
Length = 213
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 81 ARERNRVKQVNDGFNALRRHLP 102
ARER+R+ +ND F++LR+ +P
Sbjct: 74 ARERSRMHSLNDAFDSLRKAIP 95
>SB_30517| Best HMM Match : HLH (HMM E-Value=6.9e-15)
Length = 178
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 53 PNLHYRKKVHFRTNPYTGPQAASIARR---NARERNRVKQVNDGFNALRRHLP 102
PN + F P S+ +R NARER R++ +N+ F +LR LP
Sbjct: 63 PNSPIKTDEEFHLPPKQKRPRNSLKKRLLVNARERERMRVLNNAFQSLRDALP 115
>SB_47523| Best HMM Match : HLH (HMM E-Value=1.1e-18)
Length = 207
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 51 TPPNLHYRKKVHFRTNPYTGPQAASIARRNARERNRVKQVNDGFNALRRHLPA 103
T N +K +TN + + NARER+R+ +++ F +LR+ +P+
Sbjct: 21 TMTNGKRKKDKSKKTNSWKHSNRSRRLIANARERSRIHTMSEAFESLRKAVPS 73
>SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20)
Length = 984
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 138 LQQLLDESDAALGITRDQENRENIPSNNSVQPMTSIDMDDGFFYGSGSPCSEKADSPAPS 197
+Q L + GI R+++ N + +I + + F S K D+PA
Sbjct: 470 MQALQQDEKFISGINHSGIERKHLQKGNDLTLAQAIQLANTFLLFEDSARGGKVDAPA-I 528
Query: 198 ECSSGVSSAYSAVDRY 213
E SG+S+ S V+ Y
Sbjct: 529 EQQSGISNVKSGVECY 544
>SB_20446| Best HMM Match : HLH (HMM E-Value=1.26117e-44)
Length = 424
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 80 NARERNRVKQVNDGFNALRRHLP 102
N+ ER R++ +N GF ALR +P
Sbjct: 49 NSNERRRMQSINSGFQALRMLIP 71
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 80 NARERNRVKQVNDGFNALRRHLP 102
N+ ER R++ +N GF ALR +P
Sbjct: 216 NSNERRRMQSINSGFQALRMLIP 238
>SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)
Length = 591
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 179 FFYGSGSPCSEKADSPAPSECSSGVSSAYSAVDRYEVTTQQQMGSMDEEELLD 231
F GSG E+ SP S S VSS Y ++ RY+ ++ S +++LD
Sbjct: 384 FTLGSGDDDREEGSSPDGSLAS--VSSGYGSLTRYQRPLRRMTRSRSLDDMLD 434
>SB_34658| Best HMM Match : SUI1 (HMM E-Value=1e-06)
Length = 798
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 157 NRENIPSNNSVQPMTSIDMDDGFFYGSGSPCSEKADSPAPSECSSGVSSAYSAVDRYEVT 216
++E IP N +P D DD Y + A+ +P E + +S A ++ +++
Sbjct: 170 SKEQIPQVNEPEPDNLDDDDDDDSYNRFAEVDSPAEEQSPVEEKTPISEATDEINNLDLS 229
Query: 217 TQQQ 220
Q+
Sbjct: 230 EDQK 233
>SB_6246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 78 RRNARERNRVKQVNDGFNALRRHLPASXXXXXXXXXXXXXXXXXXXXXDTLRMVVEYIRY 137
R N RER R++ +N ALR+ +P DTL + +YI++
Sbjct: 65 RANDRERRRIQSINVALEALRKAVP------------NTRSSGKLTKLDTLLLARDYIKH 112
Query: 138 LQQLLDES 145
L ++L +
Sbjct: 113 LNEILQRT 120
>SB_12345| Best HMM Match : HLH (HMM E-Value=1.4e-12)
Length = 124
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 70 GPQAASIARR----NARERNRVKQVNDGFNALRRHLP 102
GP+ ++++ NARERNRV +N LR +P
Sbjct: 39 GPRLTGVSKQRRLANARERNRVHILNTNIQVLRELIP 75
>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
Length = 873
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 183 SGSPCSEKADSPAPSECSSGVSSAYS--AVDRYEVTTQQQMGSMDEEE 228
SGSP S SPAPS +S + S S A R + +++ + +E+
Sbjct: 597 SGSPASFGPSSPAPSNDTSPIPSGASSPAAQRIPASAEREFRELKKEK 644
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.127 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,722,817
Number of Sequences: 59808
Number of extensions: 320998
Number of successful extensions: 619
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 589
Number of HSP's gapped (non-prelim): 35
length of query: 239
length of database: 16,821,457
effective HSP length: 80
effective length of query: 159
effective length of database: 12,036,817
effective search space: 1913853903
effective search space used: 1913853903
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -