GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001148-TA|BGIBMGA001148-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (239 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    93   5e-21
CR954257-9|CAJ14160.1|  573|Anopheles gambiae putative esterase ...    25   2.6  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           25   2.6  
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    25   2.6  
EF382662-1|ABN54495.1|  178|Anopheles gambiae CPF family cuticle...    23   6.0  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   6.0  
DQ370043-1|ABD18604.1|  161|Anopheles gambiae putative TIL domai...    23   8.0  

>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 93.5 bits (222), Expect = 5e-21
 Identities = 59/145 (40%), Positives = 78/145 (53%), Gaps = 6/145 (4%)

Query: 59  KKVHFRTNPYTGPQ-AASIARRNARERNRVKQVNDGFNALRRHLPASXXXXXXXXXXXXX 117
           KK  +   PY  PQ +AS+ RRNARERNRVKQVN+GF  LR+H+P++             
Sbjct: 85  KKYAYCGLPYATPQQSASVQRRNARERNRVKQVNNGFANLRQHIPST--VVTALTNGARG 142

Query: 118 XXXXXXXXDTLRMVVEYIRYLQQLLDESDAALGITRDQENRENIPSNN--SVQPMTSIDM 175
                   DTLR+ VEYIR LQ++LDE+   L   + Q+   +  S+N  S   + S   
Sbjct: 143 ANKKLSKVDTLRLAVEYIRSLQRMLDENGGELPSNKQQQQLTSASSSNQLSNSSLCSASS 202

Query: 176 DDGFFYGSGSPCSEKADSPAPSECS 200
               +YG+ S  S  A SPAPS  S
Sbjct: 203 GSSTYYGTMSEPS-NASSPAPSHLS 226



 Score = 33.1 bits (72), Expect = 0.007
 Identities = 12/15 (80%), Positives = 14/15 (93%)

Query: 225 DEEELLDVISWWQQK 239
           D+EELLD ISWWQQ+
Sbjct: 357 DDEELLDYISWWQQQ 371


>CR954257-9|CAJ14160.1|  573|Anopheles gambiae putative esterase
          protein.
          Length = 573

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 63 FRTNPYTGPQAASIARRNARERNRVKQVNDGFN 95
          F+  PY  P   S+  RN   R R   V DG N
Sbjct: 62 FKGIPYAEPPVGSLRFRNPVPRARWTGVRDGSN 94


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 182  GSGSPCSEKADSPAPSECSSGVSS 205
            GSG+ CS     PAP+  S+   S
Sbjct: 1300 GSGTECSASTSEPAPAAPSNSTPS 1323


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 189 EKADSPAPSECSSGVSSAYSAVDRYEVTTQQQMG 222
           +K D+P  +E S GVSS     +  +   QQQ G
Sbjct: 252 KKGDAPFGAELSGGVSSPVGGRNSPKEQQQQQHG 285


>EF382662-1|ABN54495.1|  178|Anopheles gambiae CPF family cuticle
           protein protein.
          Length = 178

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 17  VSSGYPSNTLNKSSLEKRNVAIAPAPEKN----YVTHDTPPNLHYRKKVHFRTNPYTGPQ 72
           V S + S  ++ S L     A A    K     Y  H   P +HY    H+       P 
Sbjct: 59  VDSAHSSVRVHSSRLSNDGYAYAAPAVKYAAPAYAAHYAAPAVHYPAAAHYAAPAVHYPA 118

Query: 73  AASIA 77
           AA  A
Sbjct: 119 AAHYA 123


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 141  LLDESDAALGITRDQENRENIPSNNSVQPMTSIDMDDGFF 180
            +LDE DAAL ++  Q     + ++ +      + + DG F
Sbjct: 1109 ILDEVDAALDLSHTQNIGNMLKAHFTNSQFIIVSLKDGMF 1148


>DQ370043-1|ABD18604.1|  161|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 161

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 194 PAPSECSSGVSSAYSAVDRYEVTTQQQMGSMDEEELLDVISW 235
           P   ECS  V++ +++V    V  ++Q    DE+   + + W
Sbjct: 119 PCRDECSRCVTTIHTSVISGNVFHRKQSKKRDEQADKEALFW 160


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.312    0.127    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,221
Number of Sequences: 2123
Number of extensions: 9124
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 8
length of query: 239
length of database: 516,269
effective HSP length: 62
effective length of query: 177
effective length of database: 384,643
effective search space: 68081811
effective search space used: 68081811
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)