Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001148-TA|BGIBMGA001148-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
(239 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47356-3|CAA87416.1| 268|Caenorhabditis elegans Hypothetical pr... 51 6e-07
Z27079-2|CAA81589.1| 205|Caenorhabditis elegans Hypothetical pr... 39 0.004
U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop hel... 38 0.005
U41554-2|AAA83297.2| 111|Caenorhabditis elegans Helix loop heli... 35 0.045
Z68338-7|CAA92758.1| 203|Caenorhabditis elegans Hypothetical pr... 33 0.24
U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic helix-loo... 33 0.24
U41110-3|AAA82418.1| 170|Caenorhabditis elegans Helix loop heli... 33 0.24
AF098505-1|AAC67415.1| 536|Caenorhabditis elegans Hypothetical ... 32 0.42
U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop heli... 31 0.56
AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein. 31 0.56
AC084158-30|AAK68574.1| 184|Caenorhabditis elegans Neurogenin p... 31 0.97
AF043706-5|ABP57808.1| 536|Caenorhabditis elegans Hypothetical ... 30 1.3
AF043706-3|ABP57807.1| 534|Caenorhabditis elegans Hypothetical ... 30 1.3
Z96047-3|CAB09412.1| 207|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z50004-3|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 3.0
U23452-5|AAK31546.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.0
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 29 3.0
Z29443-2|CAA82581.1| 648|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z29443-1|CAA82576.1| 649|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z68338-5|CAA92756.1| 914|Caenorhabditis elegans Hypothetical pr... 28 6.8
AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical ... 28 6.8
Z98262-3|CAD44156.1| 454|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z98262-2|CAD44155.1| 484|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z98262-1|CAB10932.1| 502|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z71260-4|CAD44116.1| 454|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z71260-3|CAD44115.1| 484|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z71260-2|CAA95799.1| 502|Caenorhabditis elegans Hypothetical pr... 27 9.1
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 27 9.1
U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop heli... 27 9.1
M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD, alterna... 27 9.1
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 27 9.1
>Z47356-3|CAA87416.1| 268|Caenorhabditis elegans Hypothetical
protein T15H9.3 protein.
Length = 268
Score = 51.2 bits (117), Expect = 6e-07
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 70 GPQAASIARRNARERNRVKQVNDGFNALRRHLPASXXXXXXXXXXXXXXXXXXXXXDTLR 129
GP ++S+ +RN RER RV+ VNDG+ LR+HLP DTLR
Sbjct: 169 GPYSSSVWKRNERERCRVRNVNDGYERLRKHLPV------------HFDEKRISKVDTLR 216
Query: 130 MVVEYIRYLQQLL 142
+ + YI++L LL
Sbjct: 217 LAIRYIKHLDNLL 229
>Z27079-2|CAA81589.1| 205|Caenorhabditis elegans Hypothetical
protein T05G5.2 protein.
Length = 205
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 76 IARRNARERNRVKQVNDGFNALRRHLPA 103
+A+RNARER RV VN F L++HLP+
Sbjct: 5 VAKRNARERTRVHTVNQAFLVLKQHLPS 32
>U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop helix
protein 14 protein.
Length = 246
Score = 38.3 bits (85), Expect = 0.005
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 79 RNARERNRVKQVNDGFNALRRHLPASXXXXXXXXXXXXXXXXXXXXXDTLRMVVEYIRYL 138
RN RER RV QVN GF+ LR L DTLR V+YI+ L
Sbjct: 107 RNERERKRVHQVNHGFDVLRNRLQPK------------NHTKKWSKADTLREAVKYIQQL 154
Query: 139 QQLLDESDAALGITRDQENRENIPSNN 165
Q LL++ ++ + SNN
Sbjct: 155 QVLLNQDPQQPSVSSSTPDYTMNNSNN 181
>U41554-2|AAA83297.2| 111|Caenorhabditis elegans Helix loop helix
protein 19 protein.
Length = 111
Score = 35.1 bits (77), Expect = 0.045
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 78 RRNARERNRVKQVNDGFNALRRHLP 102
R NARER R K + + FN LR HLP
Sbjct: 5 RANARERCRQKSIGNAFNMLRNHLP 29
>Z68338-7|CAA92758.1| 203|Caenorhabditis elegans Hypothetical
protein T24B8.6 protein.
Length = 203
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 78 RRNARERNRVKQVNDGFNALRRHLP 102
+RN RER RV QVN GF L+ +P
Sbjct: 63 KRNERERKRVDQVNQGFVLLQERVP 87
>U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic
helix-loop-helix DNA bindingprotein HLH-3 protein.
Length = 185
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 78 RRNARERNRVKQVNDGFNALRRHLP 102
+RN RER RV QVN GF L+ +P
Sbjct: 30 KRNERERKRVDQVNQGFVLLQERVP 54
>U41110-3|AAA82418.1| 170|Caenorhabditis elegans Helix loop helix
protein 10 protein.
Length = 170
Score = 32.7 bits (71), Expect = 0.24
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 22 PSNTLNKSSLEKRNVAIAPAPEKNYVTHDTPPNLHYRKKVHFRTNPYTGPQAASIARRNA 81
P N ++ L K+N + ++N T N R G NA
Sbjct: 39 PENDTKENDLVKQNKS--EVNDENESTPSPTQNSRRRTSTGKIDRRMVGKMCTRRYEANA 96
Query: 82 RERNRVKQVNDGFNALRRHLP 102
RERNRV+Q++ F+ LR LP
Sbjct: 97 RERNRVQQLSKMFDQLRVCLP 117
>AF098505-1|AAC67415.1| 536|Caenorhabditis elegans Hypothetical
protein Y71H10A.2 protein.
Length = 536
Score = 31.9 bits (69), Expect = 0.42
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 203 VSSAYSAVDRYEVTTQQQMGSMDEEELLDVISW 235
VS+AY+ DR+E T + M ++L+D +SW
Sbjct: 152 VSTAYANCDRFETTEKIYKSPMAPQKLVDALSW 184
>U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop helix
protein 8 protein.
Length = 178
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 80 NARERNRVKQVNDGFNALRRHLPA 103
N RER R K++ND F LR+ +P+
Sbjct: 26 NRRERQRTKELNDAFTLLRKLIPS 49
>AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein.
Length = 178
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 80 NARERNRVKQVNDGFNALRRHLPA 103
N RER R K++ND F LR+ +P+
Sbjct: 26 NRRERQRTKELNDAFTLLRKLIPS 49
>AC084158-30|AAK68574.1| 184|Caenorhabditis elegans Neurogenin
protein 1 protein.
Length = 184
Score = 30.7 bits (66), Expect = 0.97
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 64 RTNPYTGPQAASIAR--RNARERNRVKQVNDGFNALRRHLPA 103
+ +P T +A ++ R NARER R+ +ND LR LPA
Sbjct: 50 KRSPATIERAKTVRRDKANARERRRMNSLNDALEHLRGILPA 91
>AF043706-5|ABP57808.1| 536|Caenorhabditis elegans Hypothetical
protein ZC123.4b protein.
Length = 536
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 19 SGYPSNTLNKSSLEKRNVAIAPAPEKNYVTHDTPPNLHYRKKVHFRTNPYTGPQAASIAR 78
S PS T++ L K + ++ P P N V T + H+ N T P +
Sbjct: 150 SNNPSETMSTVPLNKNSPSMPPPPSSNTVADFTHLRRRRPRSAHYDPNTITLPAKEEVTP 209
Query: 79 RNARE-RNRVKQVNDG 93
++ + R+ ++ +G
Sbjct: 210 QDVNDLYKRIDKLGEG 225
>AF043706-3|ABP57807.1| 534|Caenorhabditis elegans Hypothetical
protein ZC123.4a protein.
Length = 534
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 19 SGYPSNTLNKSSLEKRNVAIAPAPEKNYVTHDTPPNLHYRKKVHFRTNPYTGPQAASIAR 78
S PS T++ L K + ++ P P N V T + H+ N T P +
Sbjct: 150 SNNPSETMSTVPLNKNSPSMPPPPSSNTVADFTHLRRRRPRSAHYDPNTITLPAKEEVTP 209
Query: 79 RNARE-RNRVKQVNDG 93
++ + R+ ++ +G
Sbjct: 210 QDVNDLYKRIDKLGEG 225
>Z96047-3|CAB09412.1| 207|Caenorhabditis elegans Hypothetical
protein DY3.3 protein.
Length = 207
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 80 NARERNRVKQVNDGFNALRRHLP 102
N+RER R+ ++ND F LR LP
Sbjct: 46 NSRERRRMHELNDEFETLRECLP 68
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 181 YGSGSPCSEKADSPAPSECSSGVSSAYSAVDRYEVTTQQQ 220
+G S +E SP+ + CSS ++S++ A D Y + T QQ
Sbjct: 1422 FGRSSEITECRQSPSTALCSSFITSSHLA-DGYFIDTDQQ 1460
>Z50004-3|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 181 YGSGSPCSEKADSPAPSECSSGVSSAYSAVDRYEVTTQQQ 220
+G S +E SP+ + CSS ++S++ A D Y + T QQ
Sbjct: 1422 FGRSSEITECRQSPSTALCSSFITSSHLA-DGYFIDTDQQ 1460
>U23452-5|AAK31546.1| 304|Caenorhabditis elegans Hypothetical
protein R07G3.6 protein.
Length = 304
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 32 EKRNVAIAPAPEKNYVTHDTPPNL--HYRKKVHFRTNPYT 69
+KR IAPAP+ + T PP L + K + +NP+T
Sbjct: 193 DKRQATIAPAPKFDIFTVPPPPPLFQEWEKPILSLSNPFT 232
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 181 YGSGSPCSEKADSPAPSECSSGVSSAYSAVDRYEVTTQQQ 220
+G S +E SP+ + CSS ++S++ A D Y + T QQ
Sbjct: 1422 FGRSSEITECRQSPSTALCSSFITSSHLA-DGYFIDTDQQ 1460
>Z29443-2|CAA82581.1| 648|Caenorhabditis elegans Hypothetical
protein T07C4.3b protein.
Length = 648
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 143 DESDAALGITRDQENRENIPSNNSVQPMTSIDMDDGFFYG 182
D D A G T D +N PS S+ +S+ D+G+ G
Sbjct: 171 DCDDKAAGPTSDLSKSDNSPSQRSLAQQSSMTDDEGWVSG 210
>Z29443-1|CAA82576.1| 649|Caenorhabditis elegans Hypothetical
protein T07C4.3a protein.
Length = 649
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 143 DESDAALGITRDQENRENIPSNNSVQPMTSIDMDDGFFYG 182
D D A G T D +N PS S+ +S+ D+G+ G
Sbjct: 172 DCDDKAAGPTSDLSKSDNSPSQRSLAQQSSMTDDEGWVSG 211
>Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical
protein Y69H2.3d protein.
Length = 432
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 132 VEYIRYLQQLLDESDAALGITRDQENREN 160
++YI L LL ++A L TRDQE +EN
Sbjct: 1 MQYIVLLSVLLIGANAQLSATRDQECKEN 29
>Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical
protein Y69H2.3c protein.
Length = 731
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 132 VEYIRYLQQLLDESDAALGITRDQENREN 160
++YI L LL ++A L TRDQE +EN
Sbjct: 1 MQYIVLLSVLLIGANAQLSATRDQECKEN 29
>Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical
protein Y69H2.3b protein.
Length = 796
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 132 VEYIRYLQQLLDESDAALGITRDQENREN 160
++YI L LL ++A L TRDQE +EN
Sbjct: 1 MQYIVLLSVLLIGANAQLSATRDQECKEN 29
>Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical
protein Y69H2.3a protein.
Length = 537
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 132 VEYIRYLQQLLDESDAALGITRDQENREN 160
++YI L LL ++A L TRDQE +EN
Sbjct: 1 MQYIVLLSVLLIGANAQLSATRDQECKEN 29
>Z68338-5|CAA92756.1| 914|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 914
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 18 SSGYPSNTLNKSSLEKRNVAI-APAPEKNYVTHDTPPNLHYRKKVHFRTNPY 68
SS P + N S+ NV I AP ++ + + PP++ R+ TNPY
Sbjct: 818 SSSLPRHHRNSSNQNVINVPISAPWYSRDPIVNPEPPSVGSRRPSKQSTNPY 869
>AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical
protein Y11D7A.11 protein.
Length = 313
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 137 YLQQLLDESDAALGITRD-QENRENIPSNNSVQPMTSIDMDDGFFYGSGSPCSEKADSPA 195
YLQ + +G D +N EN+ + + G YG+ SP PA
Sbjct: 43 YLQYIQSSVQTDVGFCVDGAKNLENMYESTKAVGSGPVKRQAG--YGASSPSRASGSHPA 100
Query: 196 PSECSSGVSSAYSAVD 211
PS + +S+ S+ D
Sbjct: 101 PSPYDAASTSSSSSSD 116
>Z98262-3|CAD44156.1| 454|Caenorhabditis elegans Hypothetical
protein F15C11.2c protein.
Length = 454
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 77 ARRNARERNRVKQVNDGFNALRRHLP 102
A RN R +Q+ +GF+ LRR P
Sbjct: 377 AMRNPRVSEAFRQIQEGFSTLRREAP 402
>Z98262-2|CAD44155.1| 484|Caenorhabditis elegans Hypothetical
protein F15C11.2b protein.
Length = 484
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 77 ARRNARERNRVKQVNDGFNALRRHLP 102
A RN R +Q+ +GF+ LRR P
Sbjct: 359 AMRNPRVSEAFRQIQEGFSTLRREAP 384
>Z98262-1|CAB10932.1| 502|Caenorhabditis elegans Hypothetical
protein F15C11.2a protein.
Length = 502
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 77 ARRNARERNRVKQVNDGFNALRRHLP 102
A RN R +Q+ +GF+ LRR P
Sbjct: 377 AMRNPRVSEAFRQIQEGFSTLRREAP 402
>Z71260-4|CAD44116.1| 454|Caenorhabditis elegans Hypothetical
protein F15C11.2c protein.
Length = 454
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 77 ARRNARERNRVKQVNDGFNALRRHLP 102
A RN R +Q+ +GF+ LRR P
Sbjct: 377 AMRNPRVSEAFRQIQEGFSTLRREAP 402
>Z71260-3|CAD44115.1| 484|Caenorhabditis elegans Hypothetical
protein F15C11.2b protein.
Length = 484
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 77 ARRNARERNRVKQVNDGFNALRRHLP 102
A RN R +Q+ +GF+ LRR P
Sbjct: 359 AMRNPRVSEAFRQIQEGFSTLRREAP 384
>Z71260-2|CAA95799.1| 502|Caenorhabditis elegans Hypothetical
protein F15C11.2a protein.
Length = 502
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 77 ARRNARERNRVKQVNDGFNALRRHLP 102
A RN R +Q+ +GF+ LRR P
Sbjct: 377 AMRNPRVSEAFRQIQEGFSTLRREAP 402
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 178 GFFYGS--GSPCSEKADSPAPSECSSGVSSAYS 208
G FYGS GSP S + SPA S +SGV+ Y+
Sbjct: 1482 GGFYGSFAGSP-SNREFSPAHSPWNSGVTPTYA 1513
>U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop helix
protein 1, isoforma protein.
Length = 320
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 70 GPQAASIARRNA---RERNRVKQVNDGFNALRR 99
GP+ + RR A RER R+++VN+ F +++
Sbjct: 144 GPRRTKLDRRKAATMRERRRLRKVNEAFEVVKQ 176
>M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD,
alternatively spliced productprotein.
Length = 320
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 70 GPQAASIARRNA---RERNRVKQVNDGFNALRR 99
GP+ + RR A RER R+++VN+ F +++
Sbjct: 144 GPRRTKLDRRKAATMRERRRLRKVNEAFEVVKQ 176
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 178 GFFYGS--GSPCSEKADSPAPSECSSGVSSAYS 208
G FYGS GSP S + SPA S +SGV+ Y+
Sbjct: 1489 GGFYGSFAGSP-SNREFSPAHSPWNSGVTPTYA 1520
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.312 0.127 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,748,944
Number of Sequences: 27539
Number of extensions: 242546
Number of successful extensions: 641
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 38
length of query: 239
length of database: 12,573,161
effective HSP length: 79
effective length of query: 160
effective length of database: 10,397,580
effective search space: 1663612800
effective search space used: 1663612800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)
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