GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001148-TA|BGIBMGA001148-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (239 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      29   0.050
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.5  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   5.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.8  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 0.050
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 80  NARERNRVKQVNDGFNALRRHLP 102
           N RER R + +N+ F ALR+ +P
Sbjct: 259 NVRERQRTQSLNEAFAALRKIIP 281


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 28  KSSLEKRNVAIAPAPEKN 45
           KSS+E+ N+A++   EKN
Sbjct: 443 KSSIEEANLAVSAEREKN 460


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 184 GSPCSEKADSPAPSECSSGVSSAY 207
           GS  S   DSP  S  S+G+ + +
Sbjct: 65  GSYDSSSGDSPVSSHSSNGIHTGF 88


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 188 SEKADSPAPSECSSGVSSAYSA 209
           +EK D PA S  SS  +S  S+
Sbjct: 586 TEKPDKPASSSASSAPTSVCSS 607


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.127    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,091
Number of Sequences: 429
Number of extensions: 3164
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 239
length of database: 140,377
effective HSP length: 56
effective length of query: 183
effective length of database: 116,353
effective search space: 21292599
effective search space used: 21292599
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)