Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001148-TA|BGIBMGA001148-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
(239 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61950.2 68416.m06958 basic helix-loop-helix (bHLH) family pr... 35 0.056
At3g61950.1 68416.m06957 basic helix-loop-helix (bHLH) family pr... 35 0.056
At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family pr... 34 0.098
At3g56980.1 68416.m06342 basic helix-loop-helix (bHLH) family pr... 32 0.30
At3g48400.1 68416.m05283 DC1 domain-containing protein similar t... 31 0.91
At3g56970.1 68416.m06340 basic helix-loop-helix (bHLH) family pr... 30 1.2
At2g33510.1 68415.m04108 expressed protein 29 2.8
At1g64570.1 68414.m07319 expressed protein 28 4.9
At3g61890.1 68416.m06951 homeobox-leucine zipper protein 12 (HB-... 28 6.4
At5g38960.1 68418.m04711 germin-like protein, putative similar t... 27 8.5
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 27 8.5
At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identic... 27 8.5
At1g53165.1 68414.m06023 protein kinase, putative similar to ser... 27 8.5
>At3g61950.2 68416.m06958 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 307
Score = 34.7 bits (76), Expect = 0.056
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 13 NYVVVSSGYPSNTLNKSSLEKRNVAI-APAPEKNYVTHDTPPNLHYRKKVHFRTNPYTGP 71
N V S P + N + + + A + K + H P + K+ +T P
Sbjct: 60 NQAVSSQEIPFSQANMTLPSSTSSPLSAHSRRKRKINHLLPQEMTREKRKRRKTKPSKNN 119
Query: 72 QAASIARRN--ARERNRVKQVNDGFNALRRHLPAS 104
+ R N A ERNR +Q+N+ N+LR LP S
Sbjct: 120 EEIENQRINHIAVERNRRRQMNEHINSLRALLPPS 154
>At3g61950.1 68416.m06957 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 358
Score = 34.7 bits (76), Expect = 0.056
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 13 NYVVVSSGYPSNTLNKSSLEKRNVAI-APAPEKNYVTHDTPPNLHYRKKVHFRTNPYTGP 71
N V S P + N + + + A + K + H P + K+ +T P
Sbjct: 111 NQAVSSQEIPFSQANMTLPSSTSSPLSAHSRRKRKINHLLPQEMTREKRKRRKTKPSKNN 170
Query: 72 QAASIARRN--ARERNRVKQVNDGFNALRRHLPAS 104
+ R N A ERNR +Q+N+ N+LR LP S
Sbjct: 171 EEIENQRINHIAVERNRRRQMNEHINSLRALLPPS 205
>At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 371
Score = 33.9 bits (74), Expect = 0.098
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 59 KKVHFRTNPYTGPQAASIARRN--ARERNRVKQVNDGFNALRRHLPASXXXXXXXXXXXX 116
K+ RT P + R A ERNR +Q+N N+LR +P+S
Sbjct: 173 KRKRRRTKPTKNIEEIESQRMTHIAVERNRRRQMNVHLNSLRSIIPSSYIQRGDQASIVG 232
Query: 117 XXXXXXXXXDTLRMVVEYIRYLQQLLDESDAALGITRDQENRENIPSNNSVQPMTS 172
+++++ L+Q L +A + +N+E IP +NS++ ++S
Sbjct: 233 GA-------------IDFVKILEQQLQSLEAQKRSQQSDDNKEQIPEDNSLRNISS 275
>At3g56980.1 68416.m06342 basic helix-loop-helix (bHLH) family
protein
Length = 258
Score = 32.3 bits (70), Expect = 0.30
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 40 PAPEKNY--VTHDTPPNLHYRKKVHFRTNPY-TGPQAASIARRNARERNRVKQVNDGFNA 96
P PE+ Y VT T + V N P NA ER+R +++N F++
Sbjct: 39 PVPEETYGAVTAVTQHQNSFGVSVSSEGNEIDNNPVVVKKLNHNASERDRRRKINSLFSS 98
Query: 97 LRRHLPAS 104
LR LPAS
Sbjct: 99 LRSCLPAS 106
>At3g48400.1 68416.m05283 DC1 domain-containing protein similar to
UV-B light insensitive ULI3 [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 619
Score = 30.7 bits (66), Expect = 0.91
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 45 NYVTHDTPPNLHYRKKVHFRTNPYTGPQAASIARRNARERNRVKQVNDGF 94
+YV H+T NL +K+ F P+T + RN E + + +++GF
Sbjct: 416 DYVLHETCANLPRKKRHVFNNKPFTLHTGGKDSSRNWFECDACRTISNGF 465
>At3g56970.1 68416.m06340 basic helix-loop-helix (bHLH) family
protein
Length = 253
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 71 PQAASIARRNARERNRVKQVNDGFNALRRHLPAS 104
P NA ER+R K++N F++LR LPAS
Sbjct: 68 PVVVKKLNHNASERDRRKKINTLFSSLRSCLPAS 101
>At2g33510.1 68415.m04108 expressed protein
Length = 189
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 174 DMDDGFFYGSGSPCSEKADSPAPSECSSGVSSAYSAVDRYEVTTQQQMGSMDEEELLDV 232
D D G YG+ CSE+ S SE SS SS S + E +++ +EE++L V
Sbjct: 96 DPDSGDSYGT--VCSEEDSSYYDSEESSSESSPSSRENHKEEEEEEEEEEEEEEDVLVV 152
>At1g64570.1 68414.m07319 expressed protein
Length = 1239
Score = 28.3 bits (60), Expect = 4.9
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 126 DTLRMVVEYIRYLQQLLDESDAALGITRDQENRE--NIPSNNSVQPMTSIDMDDGFFYGS 183
D M E++ + + + +S+ G + +EN E + + NSV +TS D+D G G
Sbjct: 1086 DDEMMEEEHVEFECEEMADSEGEEG-SECEENIEMQDKDNRNSVVEITSTDVDSGKELGK 1144
Query: 184 GSPCSEKAD-SPAPSECSSGVSSAYSAVDRYEVTTQQQMG 222
SP S P+ SS V ++ TT Q G
Sbjct: 1145 DSPNSPWLSLDPSSRRLSSNVKDR-EKIEATNETTISQFG 1183
>At3g61890.1 68416.m06951 homeobox-leucine zipper protein 12
(HB-12) / HD-ZIP transcription factor 12 identical to
homeobox-leucine zipper protein ATHB-12 (GI:6899887)
[Arabidopsis thaliana]
Length = 235
Score = 27.9 bits (59), Expect = 6.4
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 17 VSSGYPSNTLNKSSLEKRNVAIAPAPEKNY---VTHDTPPNLHYRKKVHFRTNPYTGPQA 73
+SSG T+NK ++K N + E+ + ++ L RKKV P+
Sbjct: 14 ISSGM---TMNKKKMKKSNNQKRFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQ 70
Query: 74 ASIARRNARERNRVKQVNDGFNALR 98
+I +N R R + KQ+ +N LR
Sbjct: 71 VAIWFQNKRARWKTKQLEKEYNTLR 95
>At5g38960.1 68418.m04711 germin-like protein, putative similar to
germin-like protein subfamily 1 member 8 [SP|Q9LEA7];
contains PS00725 germin family signature
Length = 221
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 4 EIQLVQGQTNYVVVSSGYPSNTLNKSSLEKRNVAIAP 40
EI LVQ T +V S +P N L +L K +V + P
Sbjct: 119 EILLVQEGTLFVGFFSSFPENRLFNKTLNKGDVFVFP 155
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 173 IDMDDGFFYGSGSPCSEKADSPAPSECSSGVSSAYSAV 210
+D DG +G+GSP + ++ A E +SG S S V
Sbjct: 1359 VDASDGDPFGAGSPDEDPSNENASGEGASGESPPCSDV 1396
>At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identical
to chromomethylase CMT3 [Arabidopsis thaliana]
GI:14583092, GI:14647157
Length = 839
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/44 (22%), Positives = 27/44 (61%)
Query: 37 AIAPAPEKNYVTHDTPPNLHYRKKVHFRTNPYTGPQAASIARRN 80
A+A + +++ +T+D P ++K + R + +G Q+ S ++++
Sbjct: 610 AVANSEKRDEITYDKDPTTPFQKFIRLRKDEASGSQSKSKSKKH 653
>At1g53165.1 68414.m06023 protein kinase, putative similar to
serine/threonine protein kinase 24 [Homo sapiens]
SWISS-PROT:Q9Y6E0
Length = 1007
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 155 QENRENIPSNNSVQPMTSID--MDDGFFYGSGSPCSEKAD 192
++NR+ P++ +P TS++ + F +GS +P S D
Sbjct: 2 EDNRKTTPNSGETKPETSLETSLSSDFEFGSLTPTSPSQD 41
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.127 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,426,926
Number of Sequences: 28952
Number of extensions: 225156
Number of successful extensions: 572
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 14
length of query: 239
length of database: 12,070,560
effective HSP length: 79
effective length of query: 160
effective length of database: 9,783,352
effective search space: 1565336320
effective search space used: 1565336320
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)
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