Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001147-TA|BGIBMGA001147-PA|IPR005828|General substrate
transporter, IPR005829|Sugar transporter superfamily, IPR007114|Major
facilitator superfamily, IPR003663|Sugar transporter
         (465 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   3.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.1  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 16  AGSTAGIAAVLIPQLTNDLGRNKFTTELESWVAAI---SCLALFFGNLMSGYLMERFGRR 72
           +GST     + I  L N    + F   ++ WVA +   S      GN  +  +  RFGR+
Sbjct: 306 SGSTVPFNFMFIADLNNQSTASDFKQLIDRWVANVPNGSVTNWVSGNHDNHRVASRFGRQ 365


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 3   ALICLGVFMLNLAAGSTAGIAAVLIPQLTNDLGRNKFTTELESWVAAISCLALFFGNLMS 62
           A + LGV  L   A  T+GI A L P          +T  ++ W     CL   FG L+ 
Sbjct: 272 ARVSLGVTTLLTMATQTSGINASLPPV--------SYTKAIDIWTGV--CLTFVFGALLE 321

Query: 63  GYLMERFGR 71
             L+    R
Sbjct: 322 FALVNYASR 330


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 3   ALICLGVFMLNLAAGSTAGIAAVLIPQLTNDLGRNKFTTELESWVAAISCLALFFGNLMS 62
           A + LGV  L   A  T+GI A L P          +T  ++ W     CL   FG L+ 
Sbjct: 272 ARVSLGVTTLLTMATQTSGINASLPPV--------SYTKAIDIWTGV--CLTFVFGALLE 321

Query: 63  GYLMERFGR 71
             L+    R
Sbjct: 322 FALVNYASR 330


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 157 WSYACQLCGLFP--LTAGII-LFFAPESPAWLAS-INRIDDCISSFQWFRGASPAMKLEL 212
           W++  +   L P  + AG++  FF P+    LA  +N   +      W+ G    +    
Sbjct: 627 WNWVYEWKELIPSHIMAGLLDKFFFPKWLQVLALWLNHSPNYDQVTNWYMGWKGMLS--- 683

Query: 213 EKMLAEQSRRDKSKSKFETLKENIKKPEFWKP 244
           EK+LAE   ++  K   E +   +  P+  +P
Sbjct: 684 EKILAEPLVKEHFKKALELMNRAVSVPQSHQP 715


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.141    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,802
Number of Sequences: 429
Number of extensions: 4581
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 4
length of query: 465
length of database: 140,377
effective HSP length: 60
effective length of query: 405
effective length of database: 114,637
effective search space: 46427985
effective search space used: 46427985
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 45 (22.2 bits)