Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001146-TA|BGIBMGA001146-PA|IPR011701|Major facilitator
superfamily MFS_1
(384 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 33 0.051
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 32 0.12
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 32 0.16
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 29 1.1
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 29 1.5
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su... 27 4.4
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 27 4.4
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz... 26 7.8
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 26 7.8
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 33.5 bits (73), Expect = 0.051
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 56 GAGFGVMIPVSFTAFNSYFTKKRTTMMSANQTMSSLASITFPMLVTYLLSEYGLRWTLAL 115
GAGF V+ FTK + ++AN S+ + TFP+ + + G+ W +L
Sbjct: 406 GAGFFVIFQGCLNYLVDTFTKFAASAIAANTFTRSIFAGTFPLFSEIMFKKLGVHWGGSL 465
Query: 116 IMAIDLHLL 124
+ I L ++
Sbjct: 466 VGFIALGMI 474
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 32.3 bits (70), Expect = 0.12
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 25 LVGAGLFILGDILTIFVTRTYQLVFTF-GVIRGAGFGVMIPVSFTAFNSYFTKKRTTMMS 83
L AG+F L + + T + +V T G++ G G + S + + ++++
Sbjct: 417 LFPAGIFWLA--WSGYYTHVHWIVPTLSGLLTGCGILTIFMQSLIYLIDAYLFRAASVIA 474
Query: 84 ANQTMSSLASITFPMLVTYLLSEYGLRWTLALI 116
AN M SL + FP+ + G+ W +L+
Sbjct: 475 ANTIMRSLVAAGFPLFAVQMFHNMGIGWAGSLL 507
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 31.9 bits (69), Expect = 0.16
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 20 FRQVGLVGAGLFILGDILTIFVTRTYQLVFTFGVIRGAGFGVMIPVSFTAFNSY----FT 75
+R VG+ A FI +L T +L++ GA FG + + + + N+Y +
Sbjct: 409 WRLVGMCIASPFIPTGLLIFAWTSFPRLIWIGPAFSGAPFGYGMVLFYFSANNYLIDVYQ 468
Query: 76 KKRTTMMSANQTMSSLASITFPMLVTYLLSEYGLRWTLALI 116
+ ++A + S FP+ + Y++ +W L+
Sbjct: 469 NYCASALAAKTMVRSAGGAAFPLFIDYMMDGMTRQWAFFLL 509
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 108 GLRWTLALIMAIDLHLLFAMIVMHPVE--------WHLVKTNENNTELTSKCEVINV 156
GL W + ++ LH+ A I++H + WH+ K NNT+L+S+ E+ +
Sbjct: 322 GLPW-FSFVVQHCLHITAAQILLHIPDIQEEEFRNWHVSKKPINNTDLSSEFEIAEI 377
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 28.7 bits (61), Expect = 1.5
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 150 KCEVINVKKVEAFDEAVVKMLPGDDKECEERETRVKKRESIQKHIIKTIYENIDLDLLKD 209
KC + V EAF EA+ M + K+ E E ++K+ I++ ++ I + + + D
Sbjct: 583 KCTINGVAYGEAFTEAMAGMAKREGKDTE--ELTLQKQSFIERDRMQMISQ---MRNMHD 637
Query: 210 PRFV--STLVGVGFAFVSDVTYLAMEPTLLFSYKFTKIEVASCVMVGA 255
+++ L + FV D+ A E L Y+F + +A C V A
Sbjct: 638 NKYLVDDNLTFISSQFVHDLAGKAGEEQSLACYEFF-LALALCHSVVA 684
>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 27.1 bits (57), Expect = 4.4
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 153 VINVKKVEAF-DEAVVKMLPGDDKECEERETRVKKRESIQKHIIKTIYENIDLDLL 207
V+ V K + + D + ++ P D +CEER + K SI +HI + N+ L+ +
Sbjct: 73 VLRVDKEKGYIDLSKRRVSPEDVVKCEERFNKSKAVHSIMRHIAEK--HNVPLETM 126
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 27.1 bits (57), Expect = 4.4
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 25 LVGAGLFILGDILTIFVTRTYQLVFTF-GVIRGAGFGVMIPVSFTAFNSYFTKKRTTMMS 83
L AG+F L + + T + +V T G++ GAG ++ + + ++ +
Sbjct: 459 LFPAGIFWLA--WSGYYTYVHWIVPTLSGLLTGAGILLIFLQCLNYLLDAYLFRAASVFA 516
Query: 84 ANQTMSSLASITFPMLVTYLLSEYGLRWTLALI 116
AN M S + FP+ + G+ W +L+
Sbjct: 517 ANVIMRSAVAGGFPLFAVQMFHNMGVGWAGSLL 549
>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
L12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 206
Score = 26.2 bits (55), Expect = 7.8
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 137 LVKTNENNTELTSKCEVINVKKVEAFDEAVVKMLPGDDKECEERE----TRVKKRESI-- 190
L++T+E +L K + + + A AV P ++K EE++ T K ES
Sbjct: 89 LLETSELVKQLKEKLNIAEIAPMAAVAPAVASAAPSEEKAPEEKKEEKTTWNLKLESFDA 148
Query: 191 --QKHIIKTIYENIDLDLLKDPRFVST 215
+ +IK + + L L+ +FV +
Sbjct: 149 GSKAKVIKEVKSLLGLSLVDAKKFVES 175
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 26.2 bits (55), Expect = 7.8
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 230 LAMEPTLLFSYKFTKIEVA-SCVMVGAVSDLLARFGLAIFTYFYAVDSRLLF 280
LA E L+ + + K V C + ++D+L + G A FT + S +LF
Sbjct: 555 LAFENVPLYLHCYEKGSVVLKCTAIRTLTDMLIQHGKAKFTEYEDAISSILF 606
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.328 0.141 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,581,200
Number of Sequences: 5004
Number of extensions: 62192
Number of successful extensions: 232
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 9
length of query: 384
length of database: 2,362,478
effective HSP length: 74
effective length of query: 310
effective length of database: 1,992,182
effective search space: 617576420
effective search space used: 617576420
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 55 (26.2 bits)
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