GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001144-TA|BGIBMGA001144-PA|undefined
         (755 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    30   0.067
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    29   0.12 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   1.4  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   2.5  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    24   4.4  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   5.8  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   5.8  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 29.9 bits (64), Expect = 0.067
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 114 PHGVTNMTYPKH--SLALANPAPFTLNRGRNIHTLQPVALPNLSVSPLPPIFNARPFSPI 171
           P  V N+T PK+  + ++ +P P     G   +   P  LP +   PLPPIF     +P 
Sbjct: 140 PGNVLNLTMPKYEPNPSIIDPGPALPPTGFLCNNYPP--LPQVPPLPLPPIFPPTMINP- 196

Query: 172 TAFPNNVVQGINQMQQTLNNYNVAQSIPL 200
           +A   +  Q I    Q + +      +PL
Sbjct: 197 SAICESAAQLIFMNVQWVRSIPAFTCLPL 225


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 0.12
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 114 PHGVTNMTYPKH--SLALANPAPFTLNRGRNIHTLQPVALPNLSVSPLPPIFNARPFSP 170
           P  V N+T PK+  + ++ +P P     G   +   P  LP +   PLPPIF     +P
Sbjct: 140 PGNVLNLTMPKYEPNPSIIDPGPALPPAGFLCNNYLP--LPQVPPLPLPPIFAPTMINP 196


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)

Query: 547 DSETNSYHNYDFY---DHESASSIQH 569
           +S TN Y+NY +Y   D+ S+S++ H
Sbjct: 247 NSTTNCYNNYPYYSNMDYLSSSTMSH 272


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 559 YDHESASSIQHIVHSTDKINSTLTPPRKEYNMIERTKTKHIDNKNGSLSEINKFHVYTAA 618
           YD    + + H  +  D  N   TP  +E  + E    +H   +  SL  + K    T A
Sbjct: 235 YDETRGTMLSHFAYYVDMANMLTTPLSEEVLLDE--LLRHFPERIQSLWVLEKICTTTDA 292

Query: 619 SSF 621
           + F
Sbjct: 293 AEF 295


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 16  PMYSTTSYSYGIPYPGTTPEAWTPAVQPNDVNNNSPQSDVEILRDLNPSHELQLP 70
           P      YS  +P PG+   +W   +   +V   S  S ++ L D N  H+L  P
Sbjct: 84  PAKDPAIYSNLLPRPGSNDNSWESLI---EVTKTSETSKLQQLVD-NIEHKLSDP 134


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 677 FETKKTKVDSIQNASDEIPLKSATFVNRPSFGFTSGG 713
           F+ ++ K   +Q A  E    SA  +  PSFG   GG
Sbjct: 163 FQNRRAKAKRLQEAELEKLRLSARPLLPPSFGIFPGG 199


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 193 NVAQSIPLVEYTHSVDYPATFVESPVIDIDAVQNTNQSKSYR 234
           NV+ ++ +  Y  S  YPA  +  P +   A      + +Y+
Sbjct: 150 NVSMNMTMHGYHPSSSYPANEISCPQVQWSATPQAGSTPTYQ 191


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.128    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,686
Number of Sequences: 317
Number of extensions: 9177
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 7
length of query: 755
length of database: 114,650
effective HSP length: 62
effective length of query: 693
effective length of database: 94,996
effective search space: 65832228
effective search space used: 65832228
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 47 (23.0 bits)