GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001144-TA|BGIBMGA001144-PA|undefined
         (755 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     33   0.006
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    29   0.11 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    29   0.11 
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    29   0.14 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    28   0.32 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    27   0.75 
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    25   1.7  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    25   3.0  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    25   3.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   3.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   4.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   5.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   6.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   6.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   6.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   9.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   9.2  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 33.5 bits (73), Expect = 0.006
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 5/125 (4%)

Query: 72  VTHPTEFRNSYGETITNINVLDISYPASATAAESTK----VRTEVLPHGVTNMTYPKHSL 127
           ++ PTE  + YG  I +       YP + T+ +S      +R +V P   + M Y  ++ 
Sbjct: 372 ISEPTERISPYGYPIGSGGSFPSLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNP 431

Query: 128 ALANPAPFTLNRGRNIHTLQPVALPNLSVSPLPPIFNARPFSPITAFP-NNVVQGINQMQ 186
           AL    P       + H LQ  ++   +    P + +     P      + V    ++  
Sbjct: 432 ALIQSQPSPQYPSTSSHILQQPSIRTYTQQQFPYVHDTLQIQPQEQLTLSKVTSNYHEEF 491

Query: 187 QTLNN 191
           Q+LNN
Sbjct: 492 QSLNN 496



 Score = 23.0 bits (47), Expect = 9.2
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 5   YAPSTLYGTPAPMY-STTSYSYGIPYPGTTPEAWTPAVQPNDVNNNSPQSDVEILRDLNP 63
           Y P+ +   P+P Y ST+S+    P   T  +   P V  +D     PQ  + + +  + 
Sbjct: 429 YNPALIQSQPSPQYPSTSSHILQQPSIRTYTQQQFPYV--HDTLQIQPQEQLTLSKVTSN 486

Query: 64  SHE 66
            HE
Sbjct: 487 YHE 489


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 29.5 bits (63), Expect = 0.11
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 510 EQEYSKEYKNQEKTRSSEKLAKQIPDDF-FTTTVPTNYDSETNSYHNYDFYDHESASSIQ 568
           E+EY K Y+ + K RS +K  ++   +    +++  NY S  ++Y+N + Y+ +   +I 
Sbjct: 53  EKEYRK-YRERSKERSRDKRERERSKERKIISSLSNNYISNISNYNNNNNYNKKLYYNIN 111

Query: 569 HI 570
           +I
Sbjct: 112 YI 113


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 0.11
 Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 5/118 (4%)

Query: 467 KQEVLENYDQDQLSPANTFNNFYEVRETPFDIIKLQHTIDDWTEQEYSKEYKNQEKTRSS 526
           + E L N  +  L    +   +   RE      K +     + E    +     E+ RS 
Sbjct: 251 RYEKLHNEKEKLLEERTSRERYSRSREREQKSYKNEREYRKYGETSKERSRDRTERERSK 310

Query: 527 E-KLAKQIPDDFFTTTVPTNYDSETNSYHNYDFYDHESASSIQHIVHSTDKINSTLTP 583
           E K+   + +++  +    NY++  N+Y+NY+ Y++   ++ + + ++ + I     P
Sbjct: 311 EPKIISSLSNNYKYS----NYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQIPVP 364


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 29.1 bits (62), Expect = 0.14
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 510 EQEYSKEYKNQEKTRSSEKLAKQIPDDF-FTTTVPTNYDSETNSYHNYDFYDHESASSIQ 568
           E+EY K Y+ + K RS +K  ++   +    +++  NY S  ++Y+N + Y+ +   +I 
Sbjct: 53  EKEYRK-YRERSKERSRDKRERERSKERKIISSLSNNYISNISNYNNDNNYNKKLYYNIN 111

Query: 569 HI 570
           +I
Sbjct: 112 YI 113


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 27.9 bits (59), Expect = 0.32
 Identities = 15/73 (20%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 511 QEYSKEYKNQEKTRSSEKLAKQIPDDFFTTTVPTNYDSETNSYHNYDFYDHESASSIQHI 570
           +E SKE +++++T        +I       T+  N +   N+Y+NY+ Y++ + ++ + +
Sbjct: 60  RERSKE-RSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNYN-YNNNNYNNYKKL 117

Query: 571 VHSTDKINSTLTP 583
            ++ + I     P
Sbjct: 118 YYNINYIEQIPVP 130


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 0.75
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 510 EQEYSKEYKNQEKTRSSEKLAKQIPDDF-FTTTVPTNYDSETNSYHNYDFYDHESASSIQ 568
           E  Y K Y+   K RS +K  ++   +    +++  NY S  ++Y+N + Y+ +   +I 
Sbjct: 291 ENSYRK-YRETSKERSRDKTERERSKERKIISSLSNNYISNISNYNNNNNYNKKLYYNIN 349

Query: 569 HI 570
           +I
Sbjct: 350 YI 351


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 467 KQEVLENYDQDQLSPANTFNNFYEVRETPFDIIKLQHTIDDWTEQEYSKEYKNQEKTRSS 526
           + E L N  +  L    +   +   RE   +  K +     + E    +     E+ RS 
Sbjct: 18  RYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRTERERSR 77

Query: 527 E-KLAKQIPDDFFTTTVPTNYDSETNSYHNYD 557
           E K+   + +++  +    NY++  N+Y+NY+
Sbjct: 78  EPKIISSLSNNYNYS----NYNNYNNNYNNYN 105


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 15/107 (14%)

Query: 308 VKDEDVDKYRT-ENNL----QNIDSPLLYLKPSAPHKNHGDFILSLSTPRAENEYEIYDD 362
           V D DV+ Y+  +++L    Q+++   L++  S   + HG+        + +   E  DD
Sbjct: 171 VSDSDVESYKQIKSDLDVLRQSVEKSELWVYKSKASEEHGN--------KKKKNKEDEDD 222

Query: 363 APSTTIAPKPPTLTSWDESRTDYSHSLSPPAEEPVKSNKPKFVQIIV 409
             +   AP  P L++ D+  +     + PP          K  QI++
Sbjct: 223 GATPRKAP--PQLSTTDKKGSAIDLDIGPPLHADQAEEYKKIQQILI 267


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 511 QEYSKEYKNQEKTRSSEKLAKQIPDDFFTTTVPTNYDSETNSYHNY 556
           +E SKE +++++T        +I       T+  N +   N+Y+NY
Sbjct: 60  RERSKE-RSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNY 104


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 253 SEDHISATKTSDASFESTGVDVGNDINYDTGIPLEMNKNSFHNSDNKPSFADLRGVKDED 312
           S+ + S +  SD  F+    +    IN      L+  + S  N++NK          D D
Sbjct: 145 SKSNGSNSSNSDVLFKQNKEEE-QTINRKNSDYLDNQEVSMENTENK-------SCTDSD 196

Query: 313 VDKYRTENNLQNI 325
           ++KY+   NL+N+
Sbjct: 197 IEKYKMFCNLENV 209


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 119 NMTYPKHSLALANPAPFT-LNRGRNIHTLQPVALPNLSVSPLPPIFNAR 166
           N TY    +A+ NP  FT L+  R    +  +        P PP+   R
Sbjct: 579 NQTYTSLQMAMKNPIEFTDLSNERKYEDVCVLKTDTNQSCPSPPVTTKR 627


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 241 VIDEIKDISPQASEDHISATKTSDASFESTGVD 273
           ++ EIK I+ Q   + ++A  T+D  F +  +D
Sbjct: 495 ILKEIKIITDQLKSEELNAKVTNDWKFAAMVID 527


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 510 EQEYSKEYKNQEKTRSSEKLAKQIPDDF-FTTTVPTNYDSETNSY 553
           E+EY K Y+   K RS ++  ++   +    +++  NY+   N+Y
Sbjct: 53  EREYRK-YRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNY 96


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 510 EQEYSKEYKNQEKTRSSEKLAKQIPDDF-FTTTVPTNYDSETNSY 553
           E+EY K Y+   K RS ++  ++   +    +++  NY+   N+Y
Sbjct: 53  EREYRK-YRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNY 96


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 510 EQEYSKEYKNQEKTRSSEKLAKQIPDDF-FTTTVPTNYDSETNSY 553
           E+EY K Y+   K RS ++  ++   +    +++  NY+   N+Y
Sbjct: 53  EREYRK-YRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNY 96


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 65  HELQLPKVTHPTEFRNSYGETITNINVLD-ISY 96
           H  + PK T    + +  G   TN N+L+ ISY
Sbjct: 157 HLAETPKNTSAVRYTHYIGTLATNDNILESISY 189


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 351 PRAENEYEI--YDDAPSTTIAPKPPTLTSWD 379
           PR +N  +   +D+ P  +  P P  ++ WD
Sbjct: 645 PRVQNATDTTNFDEYPPDSDPPPPDDISGWD 675


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.128    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,002
Number of Sequences: 429
Number of extensions: 12728
Number of successful extensions: 31
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 18
length of query: 755
length of database: 140,377
effective HSP length: 63
effective length of query: 692
effective length of database: 113,350
effective search space: 78438200
effective search space used: 78438200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 47 (23.0 bits)