Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001143-TA|BGIBMGA001143-PA|undefined
         (687 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   3.0  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   4.0  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   4.0  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    24   4.0  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   4.0  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   4.0  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   4.0  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    24   4.0  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   4.0  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   5.3  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   7.0  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    23   9.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 452  WLDPTNPTHENIIRSTQLDTTINEAYNTISTTTIANLEND 491
            W  PT P++     +    T    +  T  TTT++ L +D
Sbjct: 1166 WQKPTKPSYRPPSTTNHWQTKTTTSTTTRPTTTVSQLIDD 1205



 Score = 22.6 bits (46), Expect = 9.2
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 500  EKYPLGSSATKDFFWNTSPTL--DETTSHYKEKRESVSTNPLTDSTTEAIPEK 550
            EK P    +T  +   T P+     TT+H++ K  + +T   T + ++ I +K
Sbjct: 1154 EKKPGHKPSTSSWQKPTKPSYRPPSTTNHWQTKTTTSTTTRPTTTVSQLIDDK 1206


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 629 PATEYYTSNDNTQTPRTQYLP 649
           P T+YY  N N+  P   Y P
Sbjct: 25  PGTDYYNPNANSTYPPACYSP 45


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 629 PATEYYTSNDNTQTPRTQYLP 649
           P T+YY  N N+  P   Y P
Sbjct: 25  PGTDYYNPNANSTYPPACYSP 45


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 629 PATEYYTSNDNTQTPRTQYLP 649
           P T+YY  N N+  P   Y P
Sbjct: 25  PGTDYYNPNANSTYPPACYSP 45


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 629 PATEYYTSNDNTQTPRTQYLP 649
           P T+YY  N N+  P   Y P
Sbjct: 25  PGTDYYNPNANSTYPPACYSP 45


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 629 PATEYYTSNDNTQTPRTQYLP 649
           P T+YY  N N+  P   Y P
Sbjct: 25  PGTDYYNPNANSTYPPACYSP 45


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 629 PATEYYTSNDNTQTPRTQYLP 649
           P T+YY  N N+  P   Y P
Sbjct: 25  PGTDYYNPNANSTYPPACYSP 45


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 629 PATEYYTSNDNTQTPRTQYLP 649
           P T+YY  N N+  P   Y P
Sbjct: 25  PGTDYYNPNANSTYPPACYSP 45


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 629 PATEYYTSNDNTQTPRTQYLP 649
           P T+YY  N N+  P   Y P
Sbjct: 25  PGTDYYNPNANSTYPPACYSP 45


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 7/45 (15%)

Query: 547 IPEKSTLSVQKETTDDSFIATTSLQNENIPAVISTPLSSVNDPIA 591
           +PEKST + Q+ TT    ++TT  +    PAV S P + V+  +A
Sbjct: 437 VPEKSTSTTQRTTT----VSTT--EAPPAPAV-SNPQNEVDGSVA 474


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 261 GFENDNSTITPPPSPEEKRRNIFGV 285
           GF      + P  +PEEK+R+ + V
Sbjct: 117 GFGKIEQVLPPHHAPEEKKRSFWAV 141


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 657 VYTTAPTIVTTIAQFIETSAITSNVLND 684
           VY T+ ++V ++  FI +  +T+ + ND
Sbjct: 35  VYLTSFSVVLSLGSFIVSVYLTTKIDND 62


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.130    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,860
Number of Sequences: 317
Number of extensions: 6452
Number of successful extensions: 26
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 14
length of query: 687
length of database: 114,650
effective HSP length: 61
effective length of query: 626
effective length of database: 95,313
effective search space: 59665938
effective search space used: 59665938
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)