Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001143-TA|BGIBMGA001143-PA|undefined
         (687 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    32   0.014
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   0.39 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   2.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   2.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   3.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   4.8  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   6.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   8.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 32.3 bits (70), Expect = 0.014
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 517 SPTLDETTSHYKEKRESVSTNPLTDSTTEAIP-EKSTLSVQKETTDDSFIATTSLQNENI 575
           SP   + T+  KE++ + +T P+  S  E    E+  ++    TT+ S + T      N 
Sbjct: 782 SPNSTKETTPKKERKTATTTQPVISSRKEQKKSEEKNINDHCVTTEQSVVVTNVTTTINT 841

Query: 576 PAVISTPLSSVNDPIATSSFQTTEKN 601
           P      +S    PI +    +T  N
Sbjct: 842 PTTSVISMSGTTVPITSLPASSTSIN 867


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 27.5 bits (58), Expect = 0.39
 Identities = 21/100 (21%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 477 YNTISTTTIANLENDNEITTRALEKYPLGSSATKDFFWNTSPTLDETTSHYKEKRESVST 536
           +  ++  ++AN    N   +R      +G+  T++    +S  L +T  H+++ R+S+S 
Sbjct: 680 FQDVARRSVANSPTKNA-DSREYRSNSMGAVMTRNSEMFSS-LLSDTEQHFRQHRDSLS- 736

Query: 537 NPLTDSTTEAIPEKSTLSVQKETTDDSF---IATTSLQNE 573
            P  ++ +  +  +++ +    T+ +      ATTSL+ E
Sbjct: 737 -PRVENRSAIVHSEASANANSSTSSEESREEKATTSLEAE 775


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 604  LSTKAESEYVSYKPTYLSNLVSTMEPATEYYTSNDNTQTPRTQYLP 649
            L   +ES  VS++P    N V T       YT  DN + P +Q +P
Sbjct: 1189 LVMSSESILVSWRPPSQPNGVITQYTV---YTKADNAEEPTSQKVP 1231


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 621 SNLVSTMEPATEYYTSNDNTQTPRT-QYLPITTSTDSVYTTAPTIVT 666
           S ++  + P  EYY S  +T+TP +   L    + +  + + P + T
Sbjct: 517 SVMLGEISPHHEYYDSKSSTETPPSYNQLNYNENIERFFKSKPPVAT 563


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 585 SVNDPIATSSFQTTEKNIKLSTKAESEYVSYKPTYLSNLVSTMEPAT-EYYTSNDNTQTP 643
           +   P + S+ QT    +     +  EY  Y P  + +  S   P+T  +     + +T 
Sbjct: 399 ATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPALIQSQPSPQYPSTSSHILQQPSIRTY 458

Query: 644 RTQYLPITTST 654
             Q  P    T
Sbjct: 459 TQQQFPYVHDT 469


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 621 SNLVSTMEPATEYYTSNDNTQTP 643
           S ++  + P  EYY S  +T+TP
Sbjct: 215 SVMLGEISPHHEYYDSKSSTETP 237


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 587 NDPIATSSFQTTEKNIKLSTKAESEYVSYKPTYLS-NLVS 625
           N P A     T ++N K+S   ESE V     YL  NL S
Sbjct: 227 NQPSAQCEATTMQENDKMSWLFESEDVLLPSVYLRWNLTS 266


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 639 NTQTPRTQYLPITTSTDSVYTTAPTIVTTIAQFIETSAI 677
           +T  P T     TT+T +  T A T  TT    I+   +
Sbjct: 100 STSLPATITTTTTTTTTTTATAAATATTTATGLIKQETL 138


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,368
Number of Sequences: 429
Number of extensions: 8154
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 9
length of query: 687
length of database: 140,377
effective HSP length: 62
effective length of query: 625
effective length of database: 113,779
effective search space: 71111875
effective search space used: 71111875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)